setup.py

import os
import subprocess

import numpy as np
from Cython.Build import build_ext
from setuptools import Extension, find_packages, setup

# Only compile if `LAB_BUILD=1`.

if os.environ.get("LAB_BUILD", "0") != "1":
    ext_modules = []

else:
    # Include libraries from the OS X Command Line Tools. On OS X Big Sur, these
    # libraries are not automatically included anymore.
    osx_library_path = "/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib"
    if os.path.exists(osx_library_path):
        if "LIBRARY_PATH" in os.environ and os.environ["LIBRARY_PATH"]:
            os.environ["LIBRARY_PATH"] += ":" + osx_library_path
        else:
            os.environ["LIBRARY_PATH"] = osx_library_path

    # If `xcrun` is available, make sure the includes are added to CPATH.
    if subprocess.call("which xcrun", shell=True) == 0:
        path = (
            subprocess.check_output("xcrun --show-sdk-path", shell=True)
            .strip()
            .decode("ascii")
        )
        path += "/usr/include"

        # Add to CPATH.
        if "CPATH" not in os.environ:
            os.environ["CPATH"] = ""
        os.environ["CPATH"] += path

    # Default to use gcc as the compiler if `$CC` is not set.
    if "CC" not in os.environ or not os.environ["CC"]:
        os.environ["CC"] = "gcc"

    # Check whether `gfortran` is available.
    if subprocess.call("which gfortran", shell=True) != 0:
        if "LAB_GFORTRAN" in os.environ and os.environ["LAB_GFORTRAN"]:
            gfortran = os.environ["LAB_GFORTRAN"]
        else:
            raise RuntimeError(
                "`gfortran` cannot be found."
                "Please install `gfortran` or specify a binary with `LAB_GFORTRAN`. "
                "On OS X, this can be done with `brew install gcc`."
            )
    else:
        gfortran = "gfortran"

    # Ensure that `$CC` is not symlinked to `clang`, because the default shipped
    # one often does not support OpenMP, but `gcc` does.
    out = subprocess.check_output("$CC  --version", shell=True)
    if "clang" in out.decode("ascii"):
        # It is. Now try to find a `gcc` to replace it with.
        found = False
        for i in range(100, 3, -1):
            gcci = "gcc-{}".format(i)
            if subprocess.call(["which", gcci]) == 0:
                # Set both `$CC` and `$CXX` in this case, just to be sure.
                os.environ["CC"] = gcci
                os.environ["CXX"] = "g++-{}".format(i)
                found = True
                break

        # Ensure that one was found.
        if not found:
            raise RuntimeError(
                "Your `gcc` runs clang, and no version of `gcc` could be found. "
                "Please install `gcc`. "
                "On OS X, this can be done with `brew install gcc`."
            )

    # Compile TVPACK if `gfortran` is available.
    if gfortran:
        if (
            subprocess.call(
                f"{gfortran} -fPIC -O2 -c lab/bvn_cdf/tvpack.f -o lab/bvn_cdf/tvpack.o",
                shell=True,
            )
            != 0
        ):
            raise RuntimeError("Compilation of TVPACK failed.")

    # Determine which external modules to compile.
    ext_modules = []

    if gfortran:
        extra_objects = ["lab/bvn_cdf/tvpack.o"]
        extra_link_args = ["-fopenmp"]

        # Allow the libraries for `gfortran` to be explicitly linked.
        if "LAB_LIBGFORTRAN" in os.environ and os.environ["LAB_LIBGFORTRAN"]:
            extra_objects += [os.environ["LAB_LIBGFORTRAN"]]
        else:
            extra_link_args += ["-lgfortran"]

        ext_modules.append(
            Extension(
                "lab.bvn_cdf",
                sources=["lab/bvn_cdf/bvn_cdf.pyx"],
                include_dirs=[np.get_include()],
                extra_compile_args=["-fPIC", "-O2"],
                extra_objects=extra_objects,
                extra_link_args=extra_link_args,
            )
        )

requirements = [
    "numpy>=1.16",
    "scipy>=1.3",
    "plum-dispatch>=2.5.7",
    "opt-einsum",
]

setup(
    packages=find_packages(exclude=["docs"]),
    python_requires=">=3.8",
    install_requires=requirements,
    cmdclass={"build_ext": build_ext},
    ext_modules=ext_modules,
    include_package_data=True,
)