From 75ccbdd06d81191aa4f2f99a425501e5dfeb7246 Mon Sep 17 00:00:00 2001 From: Sudipta Basak Date: Tue, 19 Jul 2016 11:33:28 +1000 Subject: [PATCH] adding nci script for linrate and time series processing --- pyrate/nci/nci_script_pyrate.sh | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 pyrate/nci/nci_script_pyrate.sh diff --git a/pyrate/nci/nci_script_pyrate.sh b/pyrate/nci/nci_script_pyrate.sh new file mode 100644 index 000000000..57d1ce655 --- /dev/null +++ b/pyrate/nci/nci_script_pyrate.sh @@ -0,0 +1,22 @@ +#!/bin/bash +#PBS -P dg9 +#PBS -q normal +#PBS -l walltime=12:00:00,mem=256GB,ncpus=128,jobfs=200GB +#PBS -l wd +module rm intel-fc intel-cc +module load intel-mkl +module load python/2.7.6 +module load python/2.7.6-matplotlib +module rm openmpi/1.6.3 +module load openmpi/1.8 +module load gdal/1.11.1-python +module load pypar/30May-2.7.6-1.8 +export PYRATEPATH=/g/data/dg9/sudipta/PyRate +PYTHONPATH=$PYRATEPATH:$PYTHONPATH +PYTHONPATH=/g/data/dg9/sudipta/site-packages:$PYTHONPATH +export GDAL_DISABLE_READDIR_ON_OPEN=YES +export PYTHONPATH +mpirun -np 128 python /g/data/dg9/sudipta/PyRate/pyrate/nci/run_pyrate_pypar.py /g/data/dg9/sudipta/PyRate/pyrate.conf +mpirun -map-by ppr:2:node python /g/data/dg9/sudipta/PyRate/pyrate/nci/run_pyrate_pypar_2.py /g/data/dg9/sudipta/PyRate/pyrate.conf +mpirun -np 128 python /g/data/dg9/sudipta/PyRate/pyrate/nci/run_pyrate_pypar_3.py /g/data/dg9/sudipta/PyRate/pyrate.conf +mpirun -map-by ppr:8:node python /g/data/dg9/sudipta/PyRate/pyrate/nci/postprocessing.py /g/data/dg9/sudipta/PyRate/pyrate.conf