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Adding windows support through conan
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‎.github/workflows/cd.yml‎

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Original file line numberDiff line numberDiff line change
@@ -45,19 +45,44 @@ jobs:
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strategy:
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fail-fast: false
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matrix:
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# platform: [macos-13, windows-latest, ubuntu-latest, macos-14]
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platform: [macos-13, ubuntu-latest, macos-14]
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platform: [macos-13, windows-latest, ubuntu-latest, macos-14]
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runs-on: ${{ matrix.platform }}
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steps:
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- name: checkout vcell-solvers repo
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- name: checkout vcell-ode repo
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uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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- name: Install Python 3.10
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uses: actions/setup-python@v5
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with:
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python-version: '3.10'
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- name: Install Windows Dependencies (Part 0 - Setup LLVM-style)
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if: matrix.platform == 'windows-latest'
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uses: llvm/actions/setup-windows@main
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with:
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arch: amd64
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- name: Install Windows Dependencies (Part 1 - Configure Conan)
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if: matrix.platform == 'windows-latest'
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shell: powershell
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run: |
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choco install conan -y
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$conanDir = "C:\Program Files\Conan\conan"
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$env:PATH = "$conanDir;$env:PATH"
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$conanDir | Set-Content -Path $env:GITHUB_PATH
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$env:CONAN_HOME = "C:\.conan"
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"CONAN_HOME=C:\.conan" | Out-File -FilePath $env:GITHUB_ENV -Append
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conan --version
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conan profile detect --force
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- name: Install Windows Dependencies (Part 2 - Reconfigure Conan)
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if: matrix.platform == 'windows-latest'
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shell: bash
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run: |
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cp conan-profiles/CI-CD/Windows-AMD64_profile.txt $CONAN_HOME/profiles/default
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- name: Install Intel MacOS dependencies
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if: matrix.platform == 'macos-13'
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shell: bash
@@ -92,21 +117,24 @@ jobs:
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touch ~/.conan2/profiles/default # if we don't make a file first, cp thinks its a folder that doesn't exist
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cp conan-profiles/CI-CD/Linux-AMD64_profile.txt ~/.conan2/profiles/default
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- name: Install Dependencies through Conan on Windows
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if: matrix.platform == 'windows-latest'
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shell: powershell
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run: |
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conan install . --output-folder build --build=missing
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- name: Install Dependencies through Conan on Unix
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if: matrix.platform != 'windows-latest'
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shell: bash
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run: |
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conan install . --output-folder build --build SundialsSolverStandalone_x64
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conan install . --output-folder build --build=missing
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# - name: Build on Macos
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# if: matrix.platform == 'macos-13' || matrix.platform == 'macos-14'
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# run: |
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# platform=macos
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# echo "working dir is $PWD"
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#
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# cd build
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# export PATH="/opt/homebrew/opt/llvm/bin:$PATH"
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# cmake -B . -S .. -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="conan_toolchain.cmake" -DCMAKE_BUILD_TYPE=Debug
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# cmake --build .
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- name: Build Windows
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if: matrix.platform == 'windows-latest'
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run: |
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cd build
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cmake -B . -S .. -DCMAKE_TOOLCHAIN_FILE="conan_toolchain.cmake" -DCMAKE_BUILD_TYPE=Debug
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cmake --build .
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- name: Build Unix
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if: matrix.platform == 'ubuntu-latest' || matrix.platform == 'macos-13' || matrix.platform == 'macos-14'
@@ -117,6 +145,13 @@ jobs:
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cmake -B . -S .. -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="conan_toolchain.cmake" -DCMAKE_BUILD_TYPE=Debug
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cmake --build .
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- name: Test Windows
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if: matrix.platform == 'windows-latest'
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run: |
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cd build
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ctest -VV
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./bin/SundialsSolverStandalone_x64 || true
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- name: Test Unix
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if: matrix.platform == 'macos-13' || matrix.platform == 'macos-14' || matrix.platform == 'ubuntu-latest'
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run: |
@@ -127,36 +162,6 @@ jobs:
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echo "------ running SundialsSolverStandalone_x64 ------"
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./bin/SundialsSolverStandalone_x64 || true
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# - name: Setup tmate session
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# uses: mxschmitt/action-tmate@v3
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# with:
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# limit-access-to-actor: false
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# - name: Install Windows Dependencies
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# if: matrix.platform == 'windows-latest'
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# uses: msys2/setup-msys2@v2
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# with:
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# msystem: CLANG64
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# update: true
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# install: >
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# zip
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# git
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# mingw-w64-clang-x86_64-curl
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# mingw-w64-clang-x86_64-toolchain
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# mingw-w64-clang-x86_64-flang
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# mingw-w64-clang-x86_64-cmake
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# mingw-w64-clang-x86_64-boost
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# mingw-w64-clang-x86_64-hdf5
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# mingw-w64-clang-x86_64-libzip
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# mingw-w64-clang-x86_64-netcdf
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# mingw-w64-clang-x86_64-zlib
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# mingw-w64-clang-x86_64-libaec
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# - name: Setup tmate session
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# uses: mxschmitt/action-tmate@v3
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# with:
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# limit-access-to-actor: false
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# - name: Build Windows
162167
# if: matrix.platform == 'windows-latest'
@@ -180,23 +185,6 @@ jobs:
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#
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# ninja -j 1
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# - name: Test Windows
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# if: matrix.platform == 'windows-latest'
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# shell: msys2 {0}
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# run: |
187-
# platform=windows
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# echo "working dir is $PWD"
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#
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# cd build
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#
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# export PATH="/d/a/_temp/msys64/clang64/bin:$PATH"
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# pacman -Sy --noconfirm diffutils
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#
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# ctest -VV
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#
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# echo "------ running SundialsSolverStandalone_x64 ------"
198-
# ./bin/SundialsSolverStandalone_x64 || true
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- name: fix Macos shared object paths
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if: matrix.platform == 'macos-13' || matrix.platform == 'macos-14'
@@ -213,20 +201,20 @@ jobs:
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../../.github/scripts/install_name_tool_macos.sh
214202
tar czvf ../upload/mac64.tgz --dereference .
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# - name: handle shared object paths for Windows native build
217-
# if: matrix.platform == 'windows-latest'
218-
# shell: msys2 {0}
219-
# run: |
220-
# mkdir build/upload
221-
# cd build/bin
222-
# rm hello_test TestVCellStoch testzip ziptool || true
223-
# ls *.exe | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep '=> /' | grep -v build | grep -iv windows | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true
224-
# ls *.dll | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep '=> /' | grep -v build | grep -iv windows | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true
225-
# ls *.dll | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep '=> /' | grep -v build | grep -iv windows | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true
226-
# chmod u+w,+x *
227-
# zip ../upload/win64.zip ./*
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# cd ../..
229-
# # fi
204+
- name: handle shared object paths for Windows native build
205+
if: matrix.platform == 'windows-latest'
206+
shell: bash
207+
run: |
208+
mkdir build/upload
209+
cd build/bin
210+
rm hello_test TestVCellStoch testzip ziptool || true
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ls *.exe | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep '=> /' | grep -v build | grep -iv windows | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true
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ls *.dll | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep '=> /' | grep -v build | grep -iv windows | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true
213+
ls *.dll | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep '=> /' | grep -v build | grep -iv windows | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true
214+
chmod u+w,+x *
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zip ../upload/win64.zip ./*
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cd ../..
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# fi
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- name: handle shared object paths for Linux native build
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if: matrix.platform == 'ubuntu-latest'
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name: macos_arm64.tgz
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path: build/upload/mac64.tgz
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# - name: Upload Windows binaries
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# if: matrix.platform == 'windows-latest'
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# uses: actions/upload-artifact@v4
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# with:
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# name: win64.zip
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# path: build/upload/win64.zip
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- name: Upload Windows binaries
248+
if: matrix.platform == 'windows-latest'
249+
uses: actions/upload-artifact@v4
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with:
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name: win64.zip
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path: build/upload/win64.zip
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- name: Upload Linux binaries
267255
if: matrix.platform == 'ubuntu-latest'

‎CMakeLists.txt‎

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -17,6 +17,10 @@ if(POLICY CMP0057)
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cmake_policy(SET CMP0057 NEW)
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endif()
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if (WINDOWS)
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cmake_policy(SET CMP0091 NEW)
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endif ()
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#############################################
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# Display extra CMAKE info while configuring
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##############################################

‎conan-profiles/CI-CD/Windows-AMD64_profile.txt‎

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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,17 @@
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[settings]
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os=Windows
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arch=x86_64
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compiler=clang
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compiler.version=16
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compiler.libcxx=libc++
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compiler.cppstd=17
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build_type=Release
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[conf]
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tools.cmake.cmaketoolchain:generator=Ninja
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tools.microsoft.bash:path="C:\Program Files\Git\bin\bash.exe"
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[buildenv]
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PERL=/c/Strawberry/perl/bin/perl.exe
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CC=clang
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CXX=clang++

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