Positron

[laurenceomfoisy]

Unable to use modelsummary() in positron

> df <- mtcars
> m <- lm(mpg ~ gear + hp, data = df)
> modelsummary::modelsummary(m)
Error:
! Function viewer not found in RStudio
Hide Traceback
    ▆
 1. ├─methods (local) `<stndrdGn>`(`<tinytabl[,2]>`)
 2. └─tinytable (local) `<stndrdGn>`(`<tinytabl[,2]>`)
 3.   └─tinytable:::print.tinytable(...)
 4.     └─rstudioapi::viewer(htmlFile)
 5.       └─rstudioapi::callFun("viewer", url, height = height)

[vincentarelbundock]

Hey ça roule?

This should be fixed by updating modelsummary and its dependencies (tinytable in particular). You can do this:

modelsummary::update_modelsummary()`

Restart R and try again.

[laurenceomfoisy]

Oh yeah!

Tout fonctionne 🔥

J'aurais pu penser à updater avant d'ouvrir un issue 🙈

Bonne journée!

[floswald]

hey folks, doesn't work for me weirdly.

> packageVersion("modelsummary")
[1] ‘2.2.0.4’

Positron Version: 2024.11.0 (Universal) build 140
Code - OSS Version: 1.93.0
Commit: e0d844b031f95acbf89f234a2cce2af9b6721f6c
Date: 2024-10-31T14:24:19.540Z
Electron: 30.4.0
Chromium: 124.0.6367.243
Node.js: 20.15.1
V8: 12.4.254.20-electron.0
OS: Darwin arm64 23.6.0



R version 4.4.2 (2024-10-31)
Platform: aarch64-apple-darwin20
Running under: macOS Sonoma 14.7.1

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Europe/Rome
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BusLocations_0.0.0.9000

loaded via a namespace (and not attached):
  [1] Rdpack_2.6.1          DBI_1.2.3             gridExtra_2.3         modelsummary_2.2.0.4  formatR_1.14          rlang_1.1.4           magrittr_2.0.3        e1071_1.7-14         
  [9] compiler_4.4.2        systemfonts_1.1.0     vctrs_0.6.5           stringr_1.5.1         pkgconfig_2.0.3       fastmap_1.2.0         backports_1.5.0       utf8_1.2.4           
 [17] ggstance_0.3.7        rmarkdown_2.28        purrr_1.0.2           xfun_0.47             cachem_1.1.0          mlogit_1.1-1          jsonlite_1.8.8        highr_0.11           
 [25] parallel_4.4.2        broom_1.0.6           cluster_2.1.6         R6_2.5.1              bslib_0.8.0           tables_0.9.28         stringi_1.8.4         parallelly_1.38.0    
 [33] car_3.1-2             rpart_4.1.23          jquerylib_0.1.4       lmtest_0.9-40         Rcpp_1.0.13           assertthat_0.2.1      knitr_1.48            future.apply_1.11.2  
 [41] zoo_1.8-12            base64enc_0.1-3       parameters_0.24.0.3   nnet_7.3-19           tidyselect_1.2.1      rstudioapi_0.16.0     abind_1.4-5           codetools_0.2-20     
 [49] listenv_0.9.1         lattice_0.22-6        tibble_3.2.1          withr_3.0.1           bayestestR_0.15.0.3   evaluate_0.24.0       foreign_0.8-87        future_1.34.0        
 [57] lambda.r_1.2.4        sf_1.0-16             futile.logger_1.4.3   units_0.8-5           proxy_0.4-27          xml2_1.3.6            pillar_1.9.0          ggpubr_0.6.0         
 [65] carData_3.0-5         KernSmooth_2.23-24    checkmate_2.3.2       insight_1.0.0.2       plotly_4.10.4         generics_0.1.3        ggplot2_3.5.1         munsell_0.5.1        
 [73] fuzzyjoin_0.1.6       scales_1.3.0          globals_0.16.3        class_7.3-22          glue_1.7.0            Hmisc_5.1-3           lazyeval_0.2.2        tools_4.4.2          
 [81] data.table_1.16.0     ggsignif_0.6.4        grid_4.4.2            tidyr_1.3.1           rbibutils_2.2.16      datawizard_0.13.0.17  colorspace_2.1-1      nlme_3.1-166         
 [89] patchwork_1.2.0       performance_0.12.4.14 htmlTable_2.4.3       Formula_1.2-5         cli_3.6.3             vistime_1.2.4         kableExtra_1.4.0      futile.options_1.0.1 
 [97] fansi_1.0.6           viridisLite_0.4.2     svglite_2.1.3         dplyr_1.1.4           gtable_0.3.5          rstatix_0.7.2         sass_0.4.9            digest_0.6.37        
[105] classInt_0.4-10       ggrepel_0.9.5         htmlwidgets_1.6.4     htmltools_0.5.8.1     lifecycle_1.0.4       httr_1.4.7            statmod_1.5.0         dfidx_0.1-0          
[113] dotwhisker_0.8.2      MASS_7.3-61      

[vincentarelbundock]

Try to update tinytable

[floswald]

no luck...

> library(modelsummary)
> packageVersion("tinytable")
[1] ‘0.6.1.1’
> modelsummary(L)
Error in `x$sizingPolicy`:
! $ operator is invalid for atomic vectors
Hide Traceback
    ▆
 1. ├─base (local) `<fn>`(x)
 2. └─kableExtra:::print.kableExtra(x)
 3.   ├─base::print(html_kable)
 4.   └─print.shiny.tag.list(html_kable)
 5.     └─base::isTRUE(x$sizingPolicy$knitr$figure)

[vincentarelbundock]

@floswald looks like you are using kableExtra rather than the default tinytable.

I have zero control over how kableExtra prints tables in Positron. You may want to create a minimal reproducible example using a simple kableExtra table --- without modelsummary --- and report it to their repository.

[floswald]

hmm...that was not my intention. how can i force this to use tinytable instead? the L above is just a list of models, I did not set any options. thanks !

[vincentarelbundock]

You probably set a global option (maybe in .Rprofile) or called config_modelsummary() to change it permanently. You can use config_modelsummary(reset = TRUE) to restore.

[floswald]

and we're back! Love it. Thanks a ton!
(still couldn't find where that was set, but I'll keep my eyes open...)