setup.py

from setuptools import setup, Extension


VERSION_MAJOR = 2
VERSION_MINOR = 3
VERSION_PATCH = 4
VERSION = '.'.join(map(str, [VERSION_MAJOR,
                             VERSION_MINOR,
                             VERSION_PATCH]))


cvarda = Extension('ext',
                   sources=['python_ext/utils.c',
                            'python_ext/wrapper.c',
                            'python_ext/CoverageTable.c',
                            'python_ext/MNVTable.c',
                            'python_ext/SequenceTable.c',
                            'python_ext/SNVTable.c',
                            'src/avl_tree.c',
                            'src/cov_table.c',
                            'src/cov_tree.c',
                            'src/mnv_table.c',
                            'src/mnv_tree.c',
                            'src/seq_table.c',
                            'src/snv_table.c',
                            'src/snv_tree.c',
                            'src/trie.c',
                            'src/utils.c'],
                   define_macros=[('VRD_VERSION_MAJOR', VERSION_MAJOR),
                                  ('VRD_VERSION_MINOR', VERSION_MINOR),
                                  ('VRD_VERSION_PATCH', VERSION_PATCH)],
                   extra_compile_args=['-Wextra',
                                       '-Wpedantic',
                                       '-std=c99'])


setup(name='cvarda',
      version=VERSION,
      description='Varda2 Variant frequency database C library',
      packages=['cvarda.utils'],
      package_dir={'cvarda.utils': './utils'},
      ext_package='cvarda',
      ext_modules=[cvarda])