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Delete function on galaxy-jobs page isn't working #159

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noah-77 opened this issue Apr 16, 2020 · 1 comment
Open

Delete function on galaxy-jobs page isn't working #159

noah-77 opened this issue Apr 16, 2020 · 1 comment

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@noah-77
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noah-77 commented Apr 16, 2020

The delete function on the galaxy-jobs page isn’t working. More specifically, I click on delete and it seems to run perfectly well, but upon returning to the submission page, the workflow is still listed with status Completed. I am unable to View Submission, but I can still View Results. This is occurring on a fresh installation of Tripal Galaxy on my dev server, so I'm fairly sure it's not a database issue.

What is the intended function of the Delete button? Is it supposed to just delete the row from showing up in the galaxy-jobs page, or is it supposed to delete the files from the Galaxy server?

@noah-77
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noah-77 commented Apr 17, 2020

I've found a related issue regarding View Submission. The View Submission button directs to a URL This appears to be an issue only on HWG due to database inconsistencies after updating Tripal Galaxy, but it's indicative that the storage system may need to be looked at.

node table, withnids and corresponding workflow:

  • nid 2038582, 2038610, 2038612- sequence quality single end
  • nid 2038580, 2038608, 2038623- bowtie 2 single end

webform_submissions table (note nids match):

  • nid 2038582- sequence quality single end
  • nid 2038580- bowtie 2 single end

However, the URL in the View Submission link uses nid 2038612 for sequence quality control and looks for nid 2038623 for bowtie 2 single end. Manually replacing the nid in the URL with the entries in the webform_submissions table (that is, replacing with 2038612 with 2038582 for sequence quality or replacing with 2038623 with 2038580 for bowtie 2) results in the correct submission being displayed.

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