Is there CLI provision for transcript exclude list?

[DrOllyGomez]

I note you have some capability in the API for specifying a list of transcript/ref accessions/ids to act as an exclude list.

I cant see a CLI switch to provide a filesystem path to specify a textfile of such accessions/ids.

Wondered if that was just an ommission from the docs, or if there is no provision for it at the moment

Describe the solution you'd like
CLI switch: --exclude-list /some/path/to/IDs/of/boring/abundanttranscripts.txt

Many thanks and congrats on Nanocompore!!!

[tleonardi]

Hi @DrOllyGomez,
you're right, the option is available but not exposed in the CLI.
Can be implemented quite easily, I'll leave this open and will take care of it for the next release!