diff --git a/DESCRIPTION b/DESCRIPTION index 7c64d10..c7dbbf1 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: zellkonverter Title: Conversion Between scRNA-seq Objects -Version: 1.15.3 -Date: 2024-10-04 +Version: 1.15.4 +Date: 2024-10-18 Authors@R: c( person("Luke", "Zappia", , "luke@lazappi.id.au", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7744-8565")), diff --git a/NEWS.md b/NEWS.md index 8a14e6a..cc2e769 100644 --- a/NEWS.md +++ b/NEWS.md @@ -2,6 +2,8 @@ * Bioconductor 3.20, October 2024 +## zellkonverter 1.15.4 (2024-10-18) + * Fix correctly assign levels to factors in R reader with **anndata** v0.7 files (Fixes #122) * Add environment for **anndata** v0.10.9 * Avoid deprecation warning due to setting `dtype` when creating Python `AnnData` objects diff --git a/inst/NEWS.Rd b/inst/NEWS.Rd index 1d28f25..8f27287 100644 --- a/inst/NEWS.Rd +++ b/inst/NEWS.Rd @@ -1,7 +1,41 @@ \name{NEWS} \title{News for Package \pkg{zellkonverter}} -\section{Version 1.14.0, Bioconductor 3.19 Release (May 2023)}{ +\section{Version 1.146.0, Bioconductor 3.30 Release (October 2024)}{ + \subsection{Major changes}{ + \itemize{ + \item{ + Add environment for \bold{anndata} v0.10.9. This is now the default + environment for the Python reader/writer. + } + }} + \subsection{Minor changes}{ + \itemize{ + \item{ + Avoid deprecation warning due to setting \code{dtype} when creating Python + \code{AnnData} objects + } + \item{ + Standardise code styling using \bold{{styler}} + } + \item{ + Add test using the more complete example H5AD file + } + }} + \subsection{Bug fixes}{ + \itemize{ + \item{ + Correctly assign levels to factors in R reader with \bold{anndata} v0.7 + files + } + \item{ + Correctly set \code{filepath} in the R reader with reading + \code{adata.raw}` with \code{use_hdf5 = TRUE} (PR from @GabrielHoffman) + } + }} +} + +\section{Version 1.14.0, Bioconductor 3.19 Release (May 2024)}{ \subsection{Major changes}{ \itemize{ \item{