DESCRIPTION

Package: entrain
Title: Predicting Environmental Regulators of Differentiation Trajectories
Version: 0.0.0.9000
Authors@R: 
    person("Wunna", "Kyaw", , "wunna.a.kyaw@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-1509-8656"))
Description: Entrain is an R package for analysis of single-cell RNA sequencing data. The purpose of Entrain is to predict how the cellular environment shapes cellular differentiation, and quantify the relative contribution of cell-cell communication versus cell-intrinsic mechanisms towards cell fate specification. If you have a dataset of cells that lie along a differentiation trajectory, and/or exhibit robust RNA velocity dynamics, then Entrain will help you generate hypotheses for identifying the environmental signals that are driving your observed dynamics.
License: GPL (>= 3)
URL: 
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
VignetteBuilder: knitr, rmarkdown
Imports: 
    assertthat,
    dplyr,
    ggnewscale,
    ggplot2,
    igraph,
    Matrix,
    randomForest,
    Seurat,
    shades,
    shiny,
    DT,
    ggrepel,
    purrr,
    reshape2,
    scales,
    tibble,
    RColorBrewer,
    tidyr,
    methods,
    grDevices,
    stats,
    utils
Suggests: 
    circlize,
    imputeTS,
    knitr,
    monocle3,
    SeuratWrappers,
    SingleCellExperiment,
    R.utils,
    reticulate,
    rmarkdown