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Hardcoded modules to be loaded #75

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nageuse opened this issue Dec 6, 2022 · 0 comments
Open

Hardcoded modules to be loaded #75

nageuse opened this issue Dec 6, 2022 · 0 comments

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@nageuse
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nageuse commented Dec 6, 2022

In the RIBO-Seq Workflow, there are six software packages that need to be loaded as modules (R, bowtie2, bwa, bcftools, hisat2, and samtools). This is hardcoded in the workflow and assumes that users have these modules/versions installed on their server. This would require a user to be extremely lucky, or to have sys-admin privileges.
I don't know about the other workflows - I didn't try.

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