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DESCRIPTION
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DESCRIPTION
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Package: aoh
Type: Package
Version: 0.0.2.2
Title: Create Area of Habitat Data
Description: Create Area of Habitat data to characterize species distributions.
Data are produced following procedures outlined by Brooks et al. (2019)
(<doi:10.1016/j.tree.2019.06.009>). Briefly, they are derived using species'
range maps from the International Union for Conservation of Nature (IUCN)
Red List of Threatened Species (<https://www.iucnredlist.org/>),
habitat classification data (Jung et al. 2020
<doi:10.1038/s41597-020-00599-8>;
Lumbierres et al. 2021 <doi:10.1111/cobi.13851>), and
elevation data (Robinson et al. 2014 <doi:10.1016/j.isprsjprs.2013.11.002>).
Data processing methods can leverage 'GDAL' and 'GRASS' to reduce
processing time.
To augment data cleaning procedures, users can also install the
'prepr' R package
(available at <https://github.com/dickoa/prepr>).
Authors@R:
c(person(c('Jeffrey', 'O'), 'Hanson',
email='[email protected]', role = c('aut','cre'),
comment = c(ORCID = '0000-0002-4716-6134')))
Imports:
utils,
methods,
parallel,
assertthat (>= 0.2.0),
rlang (>= 0.4.11),
R.utils (>= 2.11.0),
readr (>= 2.0.2),
stringi (>= 1.7.5),
dplyr (>= 1.0.7),
tidyselect (>= 1.2.0),
curl (>= 3.2),
cli (>= 3.0.1),
lwgeom (>= 0.2-1),
tibble (>= 2.1.3),
rappdirs (>= 0.3.1),
withr (>= 2.4.1),
rredlist (>= 0.7.0),
plyr (>= 1.8.6),
ggplot2 (>= 3.1.0),
fasterize (>= 1.0.3),
raster (>= 3.5-15),
rvest (>= 1.0.3)
Suggests:
testthat (>= 2.0.1),
knitr (>= 1.2.0),
roxygen2 (>= 6.1.1),
rmarkdown (>= 1.10),
pingr (>= 1.1.2),
ggmap (>= 2.6.1),
fields (>= 14.0),
smoothr (>= 0.2.2),
rnaturalearth (>= 0.1.0),
rgdal (>= 1.5.27),
gdalUtilities (>= 1.2.1),
archive (>= 1.1.2),
link2GI (>= 0.5-0),
rgrass (>= 0.3-7),
prepr (>= 0.1.9000),
vcr (>= 0.6.0)
Depends:
R (>= 4.1.0),
sf (>= 1.0-2),
terra (>= 1.6-3)
License: GPL-3
Encoding: UTF-8
Language: en-US
LazyData: true
SystemRequirements: GDAL (>= 3.0.2) (optional), PROJ (>= 7.2.0) (optional)
URL: https://prioritizr.github.io/aoh/, https://github.com/prioritizr/aoh
BugReports: https://github.com/prioritizr/aoh/issues
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Collate:
'internal.R'
'calc_spp_frc_data.R'
'clean_spp_range_data.R'
'misc_sf.R'
'misc_terra.R'
'collate_spp_extent_data.R'
'collate_spp_info_data.R'
'convert_seasonal.R'
'get_spp_summary_data.R'
'get_spp_habitat_data.R'
'get_lumb_cgls_habitat_data.R'
'get_global_elevation_data.R'
'create_spp_aoh_data.R'
'create_spp_data.R'
'create_spp_frc_data.R'
'create_spp_info_data.R'
'create_template_rast.R'
'crosswalk_jung_lvl1_data.R'
'crosswalk_jung_lvl2_data.R'
'crosswalk_jung_plvl1_data.R'
'crosswalk_lumb_cgls_data.R'
'engine_spp_aoh_gdal.R'
'engine_spp_aoh_grass.R'
'engine_spp_aoh_terra.R'
'get_jung_lvl1_habitat_data.R'
'get_jung_lvl2_habitat_data.R'
'get_jung_plvl1_habitat_data.R'
'misc_zenodo.R'
'get_latest_zenodo_version.R'
'get_spp_api_data.R'
'get_spp_threat_data.R'
'get_zenodo_file.R'
'get_zenodo_data.R'
'is_available.R'
'iucn_habitat_codes.R'
'iucn_habitat_data.R'
'iucn_threat_data.R'
'misc_gdal.R'
'package.R'
'plot_spp_aoh_data.R'
'plot_spp_frc_data.R'
'process_spp_aoh_on_local.R'
'process_spp_data_on_local.R'
'process_spp_frc_on_local.R'
'read_spp_range_data.R'
'simulate_random_field_data.R'
'simulate_spp_data.R'
'st_repair_geometry.R'
'terra_combine.R'
'terra_gdal_calc.R'
'terra_gdal_crop.R'
'terra_gdal_project.R'
'terra_gdal_rasterize.R'
'zzz.R'
Roxygen: list(markdown = TRUE)
Remotes:
dickoa/prepr,
r-spatial/link2GI