diff --git a/slides/creators/Workflow_Parameterization_for_HPC.tex b/slides/creators/Workflow_Parameterization_for_HPC.tex index 204a074..959da8b 100644 --- a/slides/creators/Workflow_Parameterization_for_HPC.tex +++ b/slides/creators/Workflow_Parameterization_for_HPC.tex @@ -144,24 +144,25 @@ \subsection{Global Workflow Configuration} local-storage-prefix: /localscratch/$SLURM_JOB_ID \end{lstlisting} \end{onlyenv} - %TODO remove this part, once the snakemake release is ready + \begin{onlyenv}<5| handout:0> - \begin{hint}{Note:} - The current \Snakemake{} development will bring a feature to annotate files for their I/O pattern, such that only specific files will undergo the stage-in/-out process. - \end{hint} \end{onlyenv} \begin{onlyenv}<6| handout:1> - You may copy this setup from \texttt{\configparam{pathtosetup}/config.yaml} to the \altverb{\~/.config/snakemake}-folder - unless your local admins provide a cluster-wide configuration. + %TODO remove this part, once the snakemake release is ready + \begin{warning} + Currently, we are working on way to annotate susceptible I/O pattern, the highlighted parts are not yet functional. + \end{warning} + %You may copy this setup from \texttt{\configparam{pathtosetup}/config.yaml} to the \altverb{\~/.config/snakemake}-folder - unless your local admins provide a cluster-wide configuration. \begin{lstlisting}[language=Bash, style=Shell] __use_yte__: true executor: slurm -latency-wait: 60 -default-storage-provider: fs -shared-fs-usage: - - persistence - - sources - - source-cache -local-storage-prefix: /localscratch/$SLURM_JOB_ID +@latency-wait: 60@ +@default-storage-provider: fs@ +@shared-fs-usage:@ +@ - persistence@ +@ - sources@ +@ - source-cache@ +@local-storage-prefix: /localscratch/$SLURM_JOB_ID@ \end{lstlisting} \end{onlyenv} \end{frame}