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lines changed Original file line number Diff line number Diff line change @@ -32,25 +32,25 @@ Whether used disk space shall be printed if Snakemake fails. Can be either `true
3232
3333``` yaml
3434- name : Linting
35- uses : snakemake/snakemake-github-action@v1
35+ uses : snakemake/snakemake-github-action@v2
3636 with :
37- directory : ' .test'
38- snakefile : ' workflow/Snakefile'
39- args : ' --lint'
37+ directory : " .test"
38+ snakefile : " workflow/Snakefile"
39+ args : " --lint"
4040
4141- name : Testing
4242 uses : snakemake/snakemake-github-action@v2
4343 with :
44- directory : ' .test'
45- snakefile : ' workflow/Snakefile'
46- args : ' --cores 1 --sdm conda --conda-cleanup-pkgs cache'
47- stagein : ' ' # additional preliminary commands to run (can be multiline)
44+ directory : " .test"
45+ snakefile : " workflow/Snakefile"
46+ args : " --cores 1 --sdm conda --conda-cleanup-pkgs cache"
47+ stagein : " " # additional preliminary commands to run (can be multiline)
4848 show-disk-usage-on-error : true
4949
50-
5150- name : Create container file
5251 uses : snakemake/snakemake-github-action@v2
5352 with :
54- snakefile : ' workflow/Snakefile'
55- task : ' containerize'
53+ directory : " .test"
54+ snakefile : " workflow/Snakefile"
55+ task : " containerize"
5656` ` `
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