diff --git a/README b/README index ecaea7e..501c03c 100644 --- a/README +++ b/README @@ -1,9 +1,17 @@ BioUtil -BioUtil - My Bioinformatics Utilities! +BioUtil - Bioinformatics Utilities! + https://github.com/shenwei356/BioUtil +http://search.cpan.org/dist/BioUtil/ + +Some great modules like BioPerl provide many robust solutions. +However, it is not easy to install for someone in some platforms. +And for some simple task scripts, a lite module may be a good choice. +So I reinvented some wheels and added some useful utilities into this module, +hoping it would be helpful. -Please check the submodules. +Please check the docments of submodules. INSTALLATION diff --git a/lib/BioUtil.pm b/lib/BioUtil.pm index 6ea7787..6efc639 100644 --- a/lib/BioUtil.pm +++ b/lib/BioUtil.pm @@ -6,17 +6,23 @@ use warnings FATAL => 'all'; =head1 NAME -BioUtil - My Bioinformatics Utilities! +BioUtil - Bioinformatics Utilities! + +Some great modules like BioPerl provide many robust solutions. +However, it is not easy to install for someone in some platforms. +And for some simple task scripts, a lite module may be a good choice. +So I reinvented some wheels and added some useful utilities into this module, +hoping it would be helpful. Please check the submodules. =head1 VERSION -Version 2014.0814 +Version 2014.0815 =cut -our $VERSION = 2014.0814; +our $VERSION = 2014.0815; =head1 AUTHOR diff --git a/lib/BioUtil/Seq.pm b/lib/BioUtil/Seq.pm index 93b30dd..c84091d 100644 --- a/lib/BioUtil/Seq.pm +++ b/lib/BioUtil/Seq.pm @@ -32,6 +32,12 @@ use List::Util qw(shuffle); BioUtil::Seq - Utilities for sequence +Some great modules like BioPerl provide many robust solutions. +However, it is not easy to install for someone in some platforms. +And for some simple task scripts, a lite module may be a good choice. +So I reinvented some wheels and added some useful utilities into this module, +hoping it would be helpful. + =head1 VERSION Version 2014.0814 diff --git a/lib/BioUtil/Util.pm b/lib/BioUtil/Util.pm index 5533ed8..84c3ae9 100644 --- a/lib/BioUtil/Util.pm +++ b/lib/BioUtil/Util.pm @@ -28,15 +28,21 @@ use JSON; =head1 NAME -BioUtil::Seq - Utilities for operation on data or file +BioUtil::Util - Utilities for operation on data or file + +Some great modules like BioPerl provide many robust solutions. +However, it is not easy to install for someone in some platforms. +And for some simple task scripts, a lite module may be a good choice. +So I reinvented some wheels and added some useful utilities into this module, +hoping it would be helpful. =head1 VERSION -Version 2014.0814 +Version 2014.0815 =cut -our $VERSION = 2014.0814; +our $VERSION = 2014.0815; =head1 EXPORT diff --git a/t/seq2.fa b/t/seq2.fa index beccbdc..c78b14e 100644 --- a/t/seq2.fa +++ b/t/seq2.fa @@ -1,6 +1,6 @@ ->seq2 -aaaaaacccccgggggttttt - >seq1 aaaaaccccggggtttt +>seq2 +aaaaaacccccgggggttttt + diff --git a/t/test.json b/t/test.json index be93d58..72af223 100644 --- a/t/test.json +++ b/t/test.json @@ -1,4 +1,4 @@ { - "b" : 2, - "a" : 1 + "a" : 1, + "b" : 2 }