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[Feature] Add Plot for Date Timeline in Map module #60

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lukepereira opened this issue Jul 19, 2024 · 5 comments
Open

[Feature] Add Plot for Date Timeline in Map module #60

lukepereira opened this issue Jul 19, 2024 · 5 comments
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enhancement New feature or request

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@lukepereira
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This can be a bar plot that aggregates on {month}-{year} buckets. Decide on using collection date or release date based on what data exists in our table

@lukepereira lukepereira converted this from a draft issue Jul 19, 2024
@ababaian
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Based on feedback:

Shoichi Sakaguchi
It would be great to explore viruses based on their sequencing date and see how the virus of interest spread

@ababaian ababaian added the enhancement New feature or request label Aug 27, 2024
@ababaian
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The Easiest implementation of this is simply to plot the Release Date for each of the runs in SraMetaData like was done in palmID:

image

@ababaian ababaian changed the title Add plot for date in SRA module [Feature] Add Plot for Date Timeline in SRA module Aug 27, 2024
@ababaian ababaian changed the title [Feature] Add Plot for Date Timeline in SRA module [Feature] Add Plot for Date Timeline in Map module Aug 28, 2024
@ababaian
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I've moved this to the map module, I think it belongs a little better there especially if we can transition it to the collection date meta-data.

@ababaian
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ababaian commented Sep 4, 2024

From #103 @almosnow

Parse date and time information from BioSample attributes (akin to what we already do with locations).

I propose doing a quick pass and extract the most trivial values (like explicit dates, years, ...) in order to have enough data to start working out the UX of the map and other modules related to temporal information.

This can/should be a task related to the Timeline [Feature]

@ababaian
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Very low priority for this sprint; but worth bumping if the situation arises that implementing this will be feasible. This is connected to the task we did define (no issue yet)

  • #TBD Parse the BioSamples XML and extract the harmonized meta-data field Collection Date which will be used in conjunction with the SRA Run Info metadata Publication Date to allow each sample to be ascribed a "Time point".

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Labels
enhancement New feature or request
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