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bichrom_gat.yaml
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name: pytorch_bichrom
channels:
- pytorch
- nvidia
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- anyio=4.3.0=pyhd8ed1ab_0
- argon2-cffi=23.1.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py39hd1e30aa_4
- arrow=1.3.0=pyhd8ed1ab_0
- asciitree=0.3.3=py_2
- asttokens=2.4.1=pyhd8ed1ab_0
- async-lru=2.0.4=pyhd8ed1ab_0
- attrs=23.2.0=pyh71513ae_0
- aws-c-auth=0.7.16=h79b3bcb_6
- aws-c-cal=0.6.10=hb29e0c7_1
- aws-c-common=0.9.13=hd590300_0
- aws-c-compression=0.2.18=hecc5fa9_1
- aws-c-event-stream=0.4.2=hf9b2f7b_4
- aws-c-http=0.8.1=h5d7533a_5
- aws-c-io=0.14.5=h50678d4_1
- aws-c-mqtt=0.10.2=hf479d2b_4
- aws-c-s3=0.5.2=h4ad9680_0
- aws-c-sdkutils=0.1.15=hecc5fa9_1
- aws-checksums=0.1.18=hecc5fa9_1
- aws-crt-cpp=0.26.2=h19f5d62_7
- aws-sdk-cpp=1.11.267=h5606698_1
- babel=2.14.0=pyhd8ed1ab_0
- beautifulsoup4=4.12.3=pyha770c72_0
- bedtools=2.31.1=hf5e1c6e_1
- biopython=1.83=py39hd1e30aa_0
- blas=2.116=mkl
- blas-devel=3.9.0=16_linux64_mkl
- bleach=6.1.0=pyhd8ed1ab_0
- bokeh=3.3.4=pyhd8ed1ab_0
- brotli-python=1.1.0=py39h3d6467e_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.27.0=hd590300_0
- ca-certificates=2024.2.2=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2024.2.2=pyhd8ed1ab_0
- cffi=1.16.0=py39h7a31438_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- cloudpickle=3.0.0=pyhd8ed1ab_0
- comm=0.2.1=pyhd8ed1ab_0
- contourpy=1.2.0=py39h7633fee_0
- cooler=0.9.3=pyhdfd78af_0
- cuda-cudart=12.1.105=0
- cuda-cupti=12.1.105=0
- cuda-libraries=12.1.0=0
- cuda-nvrtc=12.1.105=0
- cuda-nvtx=12.1.105=0
- cuda-opencl=12.4.99=0
- cuda-runtime=12.1.0=0
- cycler=0.12.1=pyhd8ed1ab_0
- cytoolz=0.12.3=py39hd1e30aa_0
- dask=2024.2.1=pyhd8ed1ab_0
- dask-core=2024.2.1=pyhd8ed1ab_0
- debugpy=1.8.1=py39h3d6467e_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- dill=0.3.8=pyhd8ed1ab_0
- distributed=2024.2.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=2.0.1=pyhd8ed1ab_0
- ffmpeg=4.3=hf484d3e_0
- filelock=3.13.1=pyhd8ed1ab_0
- fqdn=1.5.1=pyhd8ed1ab_0
- freetype=2.12.1=h267a509_2
- fsspec=2024.2.0=pyhca7485f_0
- gflags=2.2.2=he1b5a44_1004
- glog=0.7.0=hed5481d_0
- gmp=6.3.0=h59595ed_1
- gmpy2=2.1.2=py39h376b7d2_1
- gnutls=3.6.13=h85f3911_1
- h11=0.14.0=pyhd8ed1ab_0
- h2=4.1.0=pyhd8ed1ab_0
- h5py=3.10.0=nompi_py39h2c511df_101
- hdf5=1.14.3=nompi_h4f84152_100
- hpack=4.0.0=pyh9f0ad1d_0
- htslib=1.19.1=h81da01d_2
- httpcore=1.0.4=pyhd8ed1ab_0
- httpx=0.27.0=pyhd8ed1ab_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- icu=73.2=h59595ed_0
- idna=3.6=pyhd8ed1ab_0
- importlib-metadata=7.0.2=pyha770c72_0
- importlib_metadata=7.0.2=hd8ed1ab_0
- importlib_resources=6.1.3=pyhd8ed1ab_0
- ipykernel=6.29.3=pyhd33586a_0
- ipython=8.18.1=pyh707e725_3
- isoduration=20.11.0=pyhd8ed1ab_0
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.3=pyhd8ed1ab_0
- joblib=1.3.2=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- json5=0.9.22=pyhd8ed1ab_0
- jsonpointer=2.4=py39hf3d152e_3
- jsonschema=4.21.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jsonschema-with-format-nongpl=4.21.1=pyhd8ed1ab_0
- jupyter-lsp=2.2.4=pyhd8ed1ab_0
- jupyter_client=8.6.1=pyhd8ed1ab_0
- jupyter_core=5.7.2=py39hf3d152e_0
- jupyter_events=0.9.1=pyhd8ed1ab_0
- jupyter_server=2.13.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
- jupyterlab=4.1.4=pyhd8ed1ab_0
- jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
- jupyterlab_server=2.25.4=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py39h7633fee_1
- krb5=1.21.2=h659d440_0
- lame=3.100=h166bdaf_1003
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libabseil=20240116.1=cxx17_h59595ed_2
- libaec=1.1.2=h59595ed_1
- libarrow=15.0.1=he513d67_1_cpu
- libarrow-acero=15.0.1=h59595ed_1_cpu
- libarrow-dataset=15.0.1=h59595ed_1_cpu
- libarrow-flight=15.0.1=hc6145d9_1_cpu
- libarrow-flight-sql=15.0.1=h757c851_1_cpu
- libarrow-gandiva=15.0.1=hb016d2e_1_cpu
- libarrow-substrait=15.0.1=h757c851_1_cpu
- libblas=3.9.0=16_linux64_mkl
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=16_linux64_mkl
- libcrc32c=1.1.2=h9c3ff4c_0
- libcublas=12.1.0.26=0
- libcufft=11.0.2.4=0
- libcufile=1.9.0.20=0
- libcurand=10.3.5.119=0
- libcurl=8.5.0=hca28451_0
- libcusolver=11.4.4.55=0
- libcusparse=12.0.2.55=0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.2.0=h807b86a_5
- libgfortran-ng=13.2.0=h69a702a_5
- libgfortran5=13.2.0=ha4646dd_5
- libgomp=13.2.0=h807b86a_5
- libgoogle-cloud=2.22.0=h9be4e54_1
- libgoogle-cloud-storage=2.22.0=hc7a4891_1
- libgrpc=1.62.1=h15f2491_0
- libhwloc=2.9.3=default_h554bfaf_1009
- libiconv=1.17=hd590300_2
- libjpeg-turbo=2.0.0=h9bf148f_0
- liblapack=3.9.0=16_linux64_mkl
- liblapacke=3.9.0=16_linux64_mkl
- libllvm16=16.0.6=hb3ce162_3
- libnghttp2=1.58.0=h47da74e_1
- libnl=3.9.0=hd590300_0
- libnpp=12.0.2.50=0
- libnsl=2.0.1=hd590300_0
- libnuma=2.0.16=h0b41bf4_1
- libnvjitlink=12.1.105=0
- libnvjpeg=12.1.1.14=0
- libparquet=15.0.1=h352af49_1_cpu
- libpng=1.6.43=h2797004_0
- libprotobuf=4.25.3=h08a7969_0
- libre2-11=2023.09.01=h5a48ba9_2
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.45.2=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.2.0=h7e041cc_5
- libthrift=0.19.0=hb90f79a_1
- libtiff=4.2.0=hf544144_3
- libutf8proc=2.8.0=h166bdaf_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.13=h7f98852_1004
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.12.5=h232c23b_0
- libzlib=1.2.13=hd590300_5
- llvm-openmp=15.0.7=h0cdce71_0
- locket=1.0.0=pyhd8ed1ab_0
- lz4=4.3.3=py39h79d96da_0
- lz4-c=1.9.4=hcb278e6_0
- markupsafe=2.1.5=py39hd1e30aa_0
- matplotlib=3.3.2=0
- matplotlib-base=3.3.2=py39h98787fa_1
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=3.0.2=pyhd8ed1ab_0
- mkl=2022.1.0=h84fe81f_915
- mkl-devel=2022.1.0=ha770c72_916
- mkl-include=2022.1.0=h84fe81f_915
- mpc=1.3.1=hfe3b2da_0
- mpfr=4.2.1=h9458935_0
- mpmath=1.3.0=pyhd8ed1ab_0
- msgpack-python=1.0.7=py39h7633fee_0
- multiprocess=0.70.16=py39hd1e30aa_0
- nb_conda_kernels=2.3.1=pyh707e725_4
- nbclient=0.8.0=pyhd8ed1ab_0
- nbconvert-core=7.16.2=pyhd8ed1ab_0
- nbformat=5.10.2=pyhd8ed1ab_0
- ncurses=6.4=h59595ed_2
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- nettle=3.6=he412f7d_0
- networkx=3.2=pyhd8ed1ab_0
- notebook=7.1.1=pyhd8ed1ab_0
- notebook-shim=0.2.4=pyhd8ed1ab_0
- numpy=1.26.4=py39h474f0d3_0
- olefile=0.47=pyhd8ed1ab_0
- openh264=2.1.1=h780b84a_0
- openjpeg=2.4.0=hb52868f_1
- openssl=3.2.1=hd590300_0
- orc=2.0.0=h1e5e2c1_0
- overrides=7.7.0=pyhd8ed1ab_0
- packaging=24.0=pyhd8ed1ab_0
- pairix=0.3.7=py39h3d4b85c_5
- pandas=2.2.1=py39hddac248_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- partd=1.4.1=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pillow=8.2.0=py39hf95b381_1
- pip=24.0=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- platformdirs=4.2.0=pyhd8ed1ab_0
- prometheus_client=0.20.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.42=pyha770c72_0
- psutil=5.9.8=py39hd1e30aa_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pyarrow=15.0.1=py39h6925388_1_cpu
- pyarrow-hotfix=0.6=pyhd8ed1ab_0
- pybedtools=0.9.1=py39hd65a603_0
- pybigwig=0.3.22=py39h44c22c2_1
- pycparser=2.21=pyhd8ed1ab_0
- pyfaidx=0.8.1.1=pyhdfd78af_0
- pyfasta=0.5.2=py_1
- pygments=2.17.2=pyhd8ed1ab_0
- pyparsing=3.1.2=pyhd8ed1ab_0
- pysam=0.22.0=py39hcada746_1
- pysocks=1.7.1=pyha2e5f31_6
- python=3.9.18=h0755675_1_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-fastjsonschema=2.19.1=pyhd8ed1ab_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.9=4_cp39
- pytorch=2.2.1=py3.9_cuda12.1_cudnn8.9.2_0
- pytorch-cuda=12.1=ha16c6d3_5
- pytorch-mutex=1.0=cuda
- pytz=2024.1=pyhd8ed1ab_0
- pyvcf3=1.0.3=pyhdfd78af_0
- pyyaml=6.0.1=py39hd1e30aa_1
- pyzmq=25.1.2=py39h8c080ef_0
- rdma-core=50.0=hd3aeb46_1
- re2=2023.09.01=h7f4b329_2
- readline=8.2=h8228510_1
- referencing=0.33.0=pyhd8ed1ab_0
- requests=2.31.0=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- rpds-py=0.18.0=py39h9fdd4d6_0
- s2n=1.4.5=h06160fa_0
- scikit-learn=1.4.1.post1=py39ha22ef79_0
- scipy=1.12.0=py39h474f0d3_2
- seaborn=0.13.0=hd8ed1ab_0
- seaborn-base=0.13.0=pyhd8ed1ab_0
- send2trash=1.8.2=pyh41d4057_0
- setuptools=69.1.1=pyhd8ed1ab_0
- simplejson=3.19.2=py39hd1e30aa_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.10=h9fff704_0
- sniffio=1.3.1=pyhd8ed1ab_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- soupsieve=2.5=pyhd8ed1ab_1
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.14.1=py39h44dd56e_0
- sympy=1.12=pypyh9d50eac_103
- tbb=2021.11.0=h00ab1b0_1
- tblib=3.0.0=pyhd8ed1ab_0
- terminado=0.18.1=pyh0d859eb_0
- threadpoolctl=3.3.0=pyhc1e730c_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tomli=2.0.1=pyhd8ed1ab_0
- toolz=0.12.1=pyhd8ed1ab_0
- torchaudio=2.2.1=py39_cu121
- torchtriton=2.2.0=py39
- torchvision=0.17.1=py39_cu121
- tornado=6.4=py39hd1e30aa_0
- traitlets=5.14.2=pyhd8ed1ab_0
- types-python-dateutil=2.8.19.20240311=pyhd8ed1ab_0
- typing-extensions=4.10.0=hd8ed1ab_0
- typing_extensions=4.10.0=pyha770c72_0
- typing_utils=0.1.0=pyhd8ed1ab_0
- tzdata=2024a=h0c530f3_0
- ucx=1.15.0=h9929b8b_6
- uri-template=1.3.0=pyhd8ed1ab_0
- urllib3=2.2.1=pyhd8ed1ab_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- webcolors=1.13=pyhd8ed1ab_0
- webencodings=0.5.1=pyhd8ed1ab_2
- websocket-client=1.7.0=pyhd8ed1ab_0
- wheel=0.42.0=pyhd8ed1ab_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xyzservices=2023.10.1=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zeromq=4.3.5=h59595ed_1
- zict=3.0.0=pyhd8ed1ab_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
- pip:
- autopaths==1.6.0
- bash-kernel==0.9.3
- cm-jupyter-eg-kernel-wlm==3.0.0
- fasta==2.3.2
- plumbing==2.11.2
- py==1.11.0
- pycryptodome==3.20.0
- retry==0.9.2
- sh==2.0.6
- tqdm==4.66.2
prefix: /home/spg5958/group/lab/siddharth/software/miniforge3/envs/pytorch_bichrom