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Yosemite Clang
Glen Hansen edited this page Jul 27, 2015
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13 revisions
- Apple LLVM version 7.0.0 (clang-700.0.53.3)
- XCode Version 7.0
- Use GNU Fortran (GCC) 5.1.0
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Version 3.1.4
./configure --prefix=/usr/local/mpich-3.1.4 make -j 4 make install
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Version 1.2.8
CC=mpicc CFLAGS="-O3 -march=native" ./configure --64 --prefix=/usr/local/mpich-3.1.4 make -j 4 make install
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Version 1.8.15-patch1
./configure CC=mpicc FC=mpifort CXX=mpicxx CXXFLAGS="-fPIC -march=native -O3" CFLAGS="-fPIC -march=native -O3" FCFLAGS="-fPIC -march=native -Wa,-q -O3" --enable-parallel --with-zlib=/usr/local/mpich-3.1.4 --prefix=/usr/local/mpich-3.1.4 make -j 4 make install
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Version 4.3.3.1
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Edit the file
include/netcdf.h. Make the following edits near line 228:#define NC_MAX_DIMS 65536 /* max dimensions per file */ #define NC_MAX_ATTRS 8192 #define NC_MAX_VARS 524288 /* max variables per file */ #define NC_MAX_NAME 256 #define NC_MAX_VAR_DIMS 8 /* max per variable dimensions */ -
Build
./configure --prefix=/usr/local/mpich-3.1.4 CC=mpicc FC=mpifort CXX=mpicxx CFLAGS="-I/usr/local/mpich-3.1.4/include -march=native -O3" CXXFLAGS="-I/usr/local/mpich-3.1.4/include -march=native -O3" FCFLAGS="-I/usr/local/mpich-3.1.4/include -march=native -Wa,-q -O3" LDFLAGS=-L/usr/local/mpich-3.1.4/lib --disable-fsync --disable-cdmremote --disable-dap --disable-doxygen --enable-netcdf4 make -j 4 make install
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Version 1.58.0
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Build boost with the commands
echo "using mpi : /usr/local/mpich-3.1.4/bin/mpicxx ;" >> ./tools/build/v2/user-config.jam ./bootstrap.sh --with-libraries=signals,regex,filesystem,system,mpi,serialization,thread,program_options,exception --prefix=/usr/local/mpich-3.1.4 ./b2 -j 4 ./b2 -j 4 install
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Version 4.0.3
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Edit metis.h to use an IDXTYPEWIDTH of 64
cd parmetis-4.0.3/metis/include vi metis.h #define IDXTYPEWIDTH 64 -
Run CMake to build metis
cd /usr/local/src/parmetis-4.0.3/ mkdir build cd build export metis=/usr/local/src/parmetis-4.0.3/metis cmake \ -DCMAKE_INSTALL_PREFIX=/usr/local/mpich-3.1.4 \ -DMETIS_PATH=$metis \ -DGKLIB_PATH=$metis/GKlib \ -DCMAKE_C_COMPILER=mpicc \ -DCMAKE_C_FLAGS="-O3 -march=native -fPIC" \ -DCMAKE_CXX_COMPILER=mpicxx \ -DCMAKE_CXX_FLAGS="-O3 -march=native -fPIC" \ .. make -j 4 make install cp libmetis/libmetis.a /usr/local/mpich-3.1.4/lib cp /usr/local/src/parmetis-4.0.3/metis/include/metis.h /usr/local/mpich-3.1.4/include
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If you want to use the OSX BLAS Framework, edit "packages/teuchos/numerics/src/Teuchos_BLAS_wrappers.hpp", changing
# include <vecLib/cblas.h>
to
# include <cblas.h>
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do-configure script
#!/bin/sh # export TRILINOS_HOME=/Users/gahanse/Codes/Trilinos BUILD_DIR=`pwd` INSTALL_DIR=/usr/local/trilinos/MPI_REL BOOST_DIR=/usr/local/mpich-3.1.4 LIB_DIR=/usr/local/mpich-3.1.4 MPI_BASE_DIR=/usr/local/mpich-3.1.4 NETCDF=/usr/local/mpich-3.1.4 HDFDIR=/usr/local/mpich-3.1.4 PARMETISDIR=/usr/local/mpich-3.1.4 cmake \ -Wno-dev \ -D Trilinos_CONFIGURE_OPTIONS_FILE:FILEPATH=$TRILINOS_HOME/sampleScripts/AlbanySettings.cmake \ -D Trilinos_EXTRA_REPOSITORIES:STRING="SCOREC" \ -D Trilinos_ENABLE_SCOREC:BOOL=ON \ -D SCOREC_DISABLE_STRONG_WARNINGS:BOOL=ON \ -D CMAKE_BUILD_TYPE:STRING=NONE \ -D CMAKE_CXX_FLAGS:STRING="-O3 -march=native -DNDEBUG" \ -D CMAKE_C_FLAGS:STRING="-O3 -march=native -DNDEBUG" \ -D CMAKE_Fortran_FLAGS:STRING="-O3 -march=native -Wa,-q -DNDEBUG" \ -D Rythmos_ENABLE_DEBUG:BOOL=ON \ -D Trilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON \ -D Tpetra_INST_INT_LONG_LONG:BOOL=ON \ -D Tpetra_INST_INT_INT:BOOL=ON \ -D Tpetra_INST_DOUBLE:BOOL=ON \ -D Tpetra_INST_FLOAT:BOOL=OFF \ -D Tpetra_INST_COMPLEX_FLOAT:BOOL=OFF \ -D Tpetra_INST_COMPLEX_DOUBLE:BOOL=OFF \ -D Tpetra_INST_INT_LONG:BOOL=OFF \ -D Tpetra_INST_INT_UNSIGNED:BOOL=OFF \ -D Zoltan_ENABLE_ULONG_IDS:BOOL=ON \ -D Teuchos_ENABLE_LONG_LONG_INT:BOOL=ON \ -D Teuchos_ENABLE_COMPLEX:BOOL=OFF \ -D ZOLTAN_BUILD_ZFDRIVE:BOOL=OFF \ -D KokkosClassic_DefaultNode:STRING="Kokkos::Compat::KokkosSerialWrapperNode" \ -D Trilinos_ENABLE_Kokkos:BOOL=ON \ -D Trilinos_ENABLE_KokkosCore:BOOL=ON \ -D Phalanx_KOKKOS_DEVICE_TYPE:STRING="SERIAL" \ -D Phalanx_INDEX_SIZE_TYPE:STRING="INT" \ -D Phalanx_SHOW_DEPRECATED_WARNINGS:BOOL=OFF \ -D Kokkos_ENABLE_Serial:BOOL=ON \ -D Kokkos_ENABLE_OpenMP:BOOL=OFF \ -D Kokkos_ENABLE_Pthread:BOOL=OFF \ -D Trilinos_ENABLE_OpenMP:BOOL=OFF \ \ -D TPL_ENABLE_MPI:BOOL=ON \ -D MPI_BASE_DIR:PATH=$MPI_BASE_DIR \ \ -D TPL_ENABLE_Matio:BOOL=OFF \ \ -D TPL_ENABLE_MPI:BOOL=ON \ -D MPI_BASE_DIR:PATH=$MPI_BASE_DIR \ \ -D TPL_ENABLE_Pthread:BOOL=OFF \ \ -D TPL_ENABLE_Boost:BOOL=ON \ -D TPL_ENABLE_BoostLib:BOOL=ON \ -D TPL_ENABLE_BoostAlbLib:BOOL=ON \ -D Boost_INCLUDE_DIRS:PATH=$BOOST_DIR/include \ -D Boost_LIBRARY_DIRS:PATH=$BOOST_DIR/lib \ -D BoostLib_INCLUDE_DIRS:PATH=$BOOST_DIR/include \ -D BoostLib_LIBRARY_DIRS:PATH=$BOOST_DIR/lib \ -D BoostAlbLib_INCLUDE_DIRS:PATH=$BOOST_DIR/include \ -D BoostAlbLib_LIBRARY_DIRS:PATH=$BOOST_DIR/lib \ \ -D TPL_ENABLE_Netcdf:STRING=ON \ -D Netcdf_INCLUDE_DIRS:PATH=$NETCDF/include \ -D Netcdf_LIBRARY_DIRS:PATH=$NETCDF/lib \ \ -D TPL_ENABLE_HDF5:STRING=ON \ -D HDF5_INCLUDE_DIRS:PATH="${HDFDIR}/include" \ -D TPL_HDF5_LIBRARIES:PATH="${HDFDIR}/lib/libhdf5_hl.a;${HDFDIR}/lib/libhdf5.a;${LIB_DIR}/lib/libz.a" \ \ -D TPL_ENABLE_Zlib:STRING=ON \ -D Zlib_INCLUDE_DIRS:PATH=$LIB_DIR/include \ -D TPL_Zlib_LIBRARIES:PATH="$LIB_DIR/lib/libz.a" \ \ -D TPL_ENABLE_BLAS:STRING=ON \ -D TPL_ENABLE_LAPACK:STRING=ON \ -D BLAS_INCLUDE_DIRS:STRING="/System/Library/Frameworks/Accelerate.framework/Versions/Current/Frameworks/vecLib.framework/Versions/Current/Headers" \ -D BLAS_LIBRARY_DIRS:STRING="/System/Library/Frameworks/Accelerate.framework/Versions/Current/Frameworks/vecLib.framework/Versions/Current" \ -D LAPACK_INCLUDE_DIRS:STRING="/System/Library/Frameworks/Accelerate.framework/Versions/Current/Frameworks/vecLib.framework/Versions/Current/Headers" \ -D LAPACK_LIBRARY_DIRS:STRING="/System/Library/Frameworks/Accelerate.framework/Versions/Current/Frameworks/vecLib.framework/Versions/Current" \ \ -D TPL_ENABLE_ParMETIS:STRING=ON \ -D ParMETIS_INCLUDE_DIRS:PATH="${PARMETISDIR}/include" \ -D ParMETIS_LIBRARY_DIRS:PATH="${PARMETISDIR}/lib" \ \ -D CMAKE_INSTALL_PREFIX:PATH=$INSTALL_DIR \ -D Trilinos_EXTRA_LINK_FLAGS:STRING="-L${HDFDIR}/lib -L${LIB_DIR}/lib -lnetcdf -lhdf5_hl -lhdf5 -lz" \ \ -D Trilinos_ENABLE_Moertel:BOOL=ON \ -D Moertel_ENABLE_EXAMPLES:BOOL=ON \ -D Moertel_ENABLE_Morkon:BOOL=ON \ -D Trilinos_ENABLE_TriKota:BOOL=OFF \ -D HAVE_INTREPID_KOKKOSCORE:BOOL=ON \ -D Trilinos_ENABLE_SECONDARY_TESTED_CODE=OFF \ -D Trilinos_ENABLE_Amesos2:BOOL=ON \ -D Amesos2_ENABLE_KLU2:BOOL=ON \ \ $EXTRA_ARGS \ ${TRILINOS_HOME}
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CMake configure script:
#!/bin/sh export ALB_EPETRA=ON export ALB_ENABLE_SCOREC=ON export ALB_ENABLE_LCM=ON export ALB_ENABLE_LAME=OFF export ALB_ENABLE_HYDRIDE=OFF export ALB_ENABLE_QCAD=OFF export ALB_ENABLE_MOR=OFF export ALB_ENABLE_ASCR=OFF export ALB_ENABLE_AERAS=OFF export ALB_ENABLE_FELIX=OFF export ALB_ENABLE_AlbanyCI=OFF export ALB_DEBUG=OFF export ALB_ENABLE_CHECK_FPE=OFF export ALB_FLUSH_DENORMALS=ON export ALB_ENABLE_SPECULATIVE=OFF export ALB_ENABLE_SG_MP=OFF export ALB_ENABLE_PERF_TESTS=ON export TRILINOS_INSTALL_DIR=/usr/local/trilinos/MPI_REL export ALB_VERBOSE=OFF cmake \ -D ALBANY_TRILINOS_DIR:FILEPATH="$TRILINOS_INSTALL_DIR" \ -D ENABLE_LCM:BOOL=${ALB_ENABLE_LCM} \ -D ENABLE_AERAS:BOOL=${ALB_ENABLE_AERAS} \ -D ENABLE_QCAD:BOOL=${ALB_ENABLE_QCAD} \ -D ENABLE_HYDRIDE:BOOL=${ALB_ENABLE_HYDRIDE} \ -D ENABLE_LCM_SPECULATIVE:BOOL=${ALB_ENABLE_SPECULATIVE} \ -D ENABLE_LAME:BOOL=${ALB_ENABLE_LAME} \ -D CMAKE_VERBOSE_MAKEFILE:BOOL=${ALB_VERBOSE} \ -D ENABLE_DEBUGGING:BOOL=${ALB_DEBUG} \ -D ENABLE_CHECK_FPE:BOOL=${ALB_ENABLE_CHECK_FPE} \ -D ENABLE_SCOREC:BOOL=${ALB_ENABLE_SCOREC} \ -D ENABLE_FELIX:BOOL=${ALB_ENABLE_FELIX} \ -D ENABLE_MOR:BOOL=${ALB_ENABLE_MOR} \ -D ENABLE_ALBANY_CI:BOOL=${ALB_ENABLE_AlbanyCI} \ -D ENABLE_ASCR:BOOL=${ALB_ENABLE_ASCR} \ -D ENABLE_SG_MP:BOOL=${ALB_ENABLE_SG_MP} \ -D ENABLE_PERFORMANCE_TESTS:BOOL=${ALB_ENABLE_PERF_TESTS} \ -D ALBANY_CTEST_TIMEOUT:INTEGER=70 \ \ ..
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Instructions at http://colinwhite.net/dropplets/MacVim
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Get recent MacVim
git clone https://github.com/b4winckler/macvim -
Build it
cd macvim/src LDFLAGS=-L/usr/lib ./configure --with-features=huge \ --enable-rubyinterp \ --enable-pythoninterp \ --enable-perlinterp \ --enable-cscope make -j 4 -
Copy macvim/src/MacVim/build/Release/MacVim.app to Applications folder
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Get OpenSSH 6.9p1
wget http://openbsd.mirrorcatalogs.com/pub/OpenBSD/OpenSSH/portable/openssh-6.9p1.tar.gz -
Edit source according to https://trac.macports.org/browser/trunk/dports/net/openssh/files/launchd.patch?rev=121205
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Build OpenSSH
./configure --with-zlib=/usr/local/mpich-3.1.4/lib --prefix=/usr/local --with-xauth=/opt/X11/bin/xauth --with-libedit make -j 4 make -j 4 install