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contribution_detailed.php
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<!DOCTYPE html>
<html>
<head>
<title>Catalog Agrogeophysic</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="stylesheet" href="http://cdn.leafletjs.com/leaflet-0.7.3/leaflet.css" />
<link rel="stylesheet" href="https://api.tiles.mapbox.com/mapbox.js/plugins/leaflet-markercluster/v0.4.0/MarkerCluster.css" />
<link rel="stylesheet" href="https://api.tiles.mapbox.com/mapbox.js/plugins/leaflet-markercluster/v0.4.0/MarkerCluster.Default.css" />
<!-- Latest compiled and minified CSS -->
<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/[email protected]/dist/css/bootstrap-select.min.css">
<!-- Latest compiled and minified JavaScript -->
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/js/bootstrap-select.min.js"></script>
<!-- (Optional) Latest compiled and minified JavaScript translation files -->
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/js/i18n/defaults-*.min.js"></script>
<!-- Favicons -->
<link href="img/favicon.png" rel="icon">
<link href="img/apple-touch-icon.png" rel="apple-touch-icon">
<!-- Google Fonts -->
<link href="https://fonts.googleapis.com/css?family=Open+Sans:300,300i,400,400i,500,600,700,700i|Montserrat:300,400,500,600,700" rel="stylesheet">
<!-- Bootstrap CSS File -->
<link href="lib/bootstrap/css/bootstrap.min.css" rel="stylesheet">
<!-- Libraries CSS Files -->
<link href="lib/font-awesome/css/font-awesome.min.css" rel="stylesheet">
<link href="lib/animate/animate.min.css" rel="stylesheet">
<link href="lib/ionicons/css/ionicons.min.css" rel="stylesheet">
<link href="lib/owlcarousel/assets/owl.carousel.min.css" rel="stylesheet">
<link href="lib/lightbox/css/lightbox.min.css" rel="stylesheet">
<!-- Main Stylesheet File -->
<!-- <link href="css/style.css" rel="stylesheet"> -->
<link href="css/style_contrib_details.css" rel="stylesheet">
<!-- # https://api.altmetric.com/embeds.html -->
<script type='text/javascript' src='https://d1bxh8uas1mnw7.cloudfront.net/assets/embed.js'></script>
</head>
<style type="text/css">
#imgfixed
{
top:20px;
background: blue;
position: fixed;
width: 25%;
}
</style>
<body>
<?php include("header_home_contrib.php"); ?>
<?php
# Connect to MySQL database
include("dbb/connect_db.php");
// $sql_main_joint_idnb = 'SELECT *
// FROM main
// FOR JSON PATH';
// abiotic.land_use
// $sql_main_joint_idnb='
// SELECT main.id, main.contrib_type,main.contrib_title,main.contrib_date,main.contrib_authors,main.DOI,main.journal,main.icon_img,main.keywords,
// main.id_FK_abiotic, main.id_FK_biotic,main.id_FK_prospection,main.id_FK_processing,main.id_FK_contact,
// contact.name,contact.surname,contact.name,contact.email,contact.organisation,contact.website_perso, contact.id_contact_l2,
// prospection.datep, prospection.method, prospection.spatial_scale, prospection.bound_cond, prospection.temperature, prospection.temporal_scale, prospection.instrument, prospection.dimension, prospection.permanent_setup, prospection.lat AS x, prospection.longitude AS y,prospection.id_prospection_l2,
// processing.software_name,processing.licence_type,processing.DOI_software,processing.notebook_filename,processing.notebook_purpose,processing.data_repo_url, processing.data_licence,processing.id_processing_l2,
// biotic.species,biotic.organ,biotic.id_biotic_l2,
// abiotic.soil_type, abiotic.water_input ,abiotic.id_abiotic_l2
// FROM
// main
// LEFT JOIN contact ON (main.id_FK_contact = contact.id_contact_l2)
// LEFT JOIN processing ON (main.id_FK_processing = processing.id_processing_l2)
// LEFT JOIN prospection ON (main.id_FK_prospection = prospection.id_prospection_l2)
// LEFT JOIN biotic ON (main.id_FK_biotic = biotic.id_biotic_l2)
// LEFT JOIN abiotic ON (main.id_FK_abiotic = abiotic.id_abiotic_l2)
// WHERE main.id = ?';
// $sql_main_joint_idnb='
// SELECT contrib_type,contrib_title,contrib_date,contrib_authors,DOI,journal,icon_img,keywords FROM main
// WHERE main.id = ?';
$sql_main_joint_idnb='
SELECT main.*,
contact.*,
prospection.*, prospection.lat AS x, prospection.longitude AS y,
processing.*,
biotic.*,
abiotic.*
FROM
main
LEFT JOIN contact ON (main.id_FK_contact = contact.id_contact_l2)
LEFT JOIN processing ON (main.id_FK_processing = processing.id_processing_l2)
LEFT JOIN prospection ON (main.id_FK_prospection = prospection.id_prospection_l2)
LEFT JOIN biotic ON (main.id_FK_biotic = biotic.id_biotic_l2)
LEFT JOIN abiotic ON (main.id_FK_abiotic = abiotic.id_abiotic_l2)
WHERE main.id = ?';
// ALTER TABLE Temptable
// DROP COLUMN main.id_FK_biotic
// DROP TABLE Temptable';
#FOR JSON AUTO';
// NEED TO REMOVE collumns with foreign key ids
$select = $conn->prepare($sql_main_joint_idnb);
$select->execute(array($_GET['idnb']));
?>
<?php
$overview = $select->fetch(PDO::FETCH_ASSOC);
// $overview = mysql_fetch_array($select, MYSQL_ASSOC);
unset($overview['id_FK_prospection']);
unset($overview['id_FK_biotic']);
unset($overview['id_FK_contact']);
unset($overview['id_FK_processing']);
unset($overview['id_FK_abiotic']);
unset($overview['id_processing_l2']);
unset($overview['id_prospection_l2']);
unset($overview['id_biotic_l2']);
unset($overview['id_abiotic_l2']);
$json_data=array();//create the array
array_push($json_data,$overview);
//echo var_dump($overview) ;
// echo json_encode($json_data)
?>
<!------------------------------------- DISPLAY Scientif comm CONTRIB ------------------------------------ -->
<?php
if ($overview['contrib_type']=='Research article'|| $overview['contrib_type']== 'Book')
{
?>
<section id="about">
<div class="container">
<div class="row">
<div class="col-lg-5 col-md-6" >
<div class="sticky-top">
<!-- <button class="btn" value="Download_JSON" onclick="DownloadJSON()"><i class="fa fa-download"></i> Download Json metadatas</button> -->
<button class="btn" id="Download_JSON"><i class="fa fa-download"></i> Download Json metadatas</button>
<!-- something.outerHTML += '<input id="btnsave" ...>'
document.getElementById ("btnsave").addEventListener ("click", resetEmotes, false); -->
<!-- <button class="btn" id="Download_XML"><i class="fa fa-download"></i> Download XML metadatas</button>
-->
<!-- <button class="btn" value="Download XML" onclick="DownloadXML()"><i class="fa fa-download"></i> Download XML metadatas</button> -->
<!-- <input type="button" value="Download JSON" onclick="DownloadJSON()" />
-->
<?php
if (is_null($overview['icon_img']))
{
// echo '****************************************';
echo '<div class="about-img"><p><img src="dbb/SC_icons/Eco_leaves_nature-512.png" width="40"><p></div>';
}
else
{
echo '<div class="caption"><h3><img src="dbb/SC_icons/'.$overview['icon_img'].'" width="400"></h3></div>';
}
?>
<h1>
<?php echo $overview['contrib_title']; ?>
</h1>
</div>
</div>
<div class="col-lg-7 col-md-6">
<div class="about-content">
<h3>Metrics</h3>
<?php
echo '<div class="altmetric-embed" data-badge-type="donut" data-doi="'.$overview['DOI'].'"></div>'
?>
<h2>Contribution overview</h2>
<ul class="list-group">
<?php
if (!empty($overview['contrib_type']))
{
echo '<li class="list-group-item"><b>Type:</b> '.$overview['contrib_type'].'</li>';
}
if (!empty($overview['keywords']))
{
echo '<li class="list-group-item"><b>Keywords: </b> '.$overview['keywords'].'</li>';
}
if (!empty($overview['DOI']))
{
// echo '<li class="list-group-item"><b>DOI: </b> '.$overview['DOI_proc_tools'].'</li>';
echo '<li class="list-group-item"><a href="https://dx.doi.org/'.$overview['DOI'].'" target="_blank"><b>Link to publication</b></a></li>';
}
?>
</ul>
<h2>Prospection</h2>
<ul class="list-group">
<?php
// echo '<h6>Date</h6>';
if (!empty($overview['datep']))
{
echo '<li class="list-group-item"><b>Date: </b> '.$overview['datep'].'</li>';
}
// echo '<h6>lat/long</h6>';
if (!empty($overview['lat']))
{
echo '<li class="list-group-item"><b>Lat/long: </b> '.$overview['lat']." ; " . $overview['longitude'].' </li>';
// echo $myName . " " . $myAge
}
// echo '<h6>method</h6>';
if (!empty($overview['method']))
{
echo '<li class="list-group-item"><b>Method(s): </b> '.$overview['method'].'</li>';
}
// echo '<h6>scale</h6>';
if (!empty($overview['scale']))
{
echo '<li class="list-group-item"><b>Scale: </b> '.$overview['scale'].'</li>';
}
// echo '<h6>instrument</h6>';
if (!empty($overview['instrument']))
{
echo '<li class="list-group-item"><b>Instrument: </b> '.$overview['instrument'].'</li>';
}
// echo '<h6>dimension</h6>';
if (!empty($overview['dimension']))
{
echo '<li class="list-group-item"><b>Dimension: </b> '.$overview['dimension'].'</li>';
}
// echo '<h6>permanent_setup</h6>';
if (!empty($overview['permanent_setup']))
{
echo '<li class="list-group-item"><b>Permanent setup: </b> '.$overview['permanent_setup'].'</li>';
}
?>
</ul>
<h2>Processing tools</h2>
<ul class="list-group">
<?php
if (!empty($overview['software_name']))
{
echo '<li class="list-group-item"><b>Software: </b> '.$overview['software_name'].'</li>';
}
if (!empty($overview['licence_type']))
{
echo '<li class="list-group-item"><b>Licence type: </b> '.$overview['licence_type'].'</li>';
}
if (!empty($overview['DOI_proc_tools']))
{
echo '<li class="list-group-item"><b>DOI: </b> '.$overview['DOI_proc_tools'].'</li>';
}
?>
</ul>
<h2>Biotic</h2>
<ul class="list-group">
<?php
if (!empty($overview['species']))
{
echo '<li class="list-group-item"><b>Species: </b> '.$overview['species'].'</li>';
}
if (!empty($overview['organ']))
{
echo '<li class="list-group-item"><b>Organ: </b> '.$overview['organ'].'</li>';
}
?>
</ul>
<h2>Abiotic description</h2>
<ul class="list-group">
<?php
if (!empty($overview['soil_type']))
{
echo '<li class="list-group-item"><b>Soil type: </b> '.$overview['soil_type'].'</li>';
}
if (!empty($overview['water_input']))
{
echo '<li class="list-group-item"><b>Water input: </b> '.$overview['water_input'].'</li>';
}
?>
</ul>
<h2>Contact description</h2>
<ul class="list-group">
<?php
if (!empty($overview['contrib_authors']))
{
echo '<li class="list-group-item"><b>Contrib. Authors: </b> '.$overview['contrib_authors'].'</li>';
}
if (!empty($overview['name']))
{
echo '<li class="list-group-item"><b>1st. Author: </b> '.$overview['surname'].' '.$overview['name'].'</li>';
}
if (!empty($overview['email']))
{
echo '<li class="list-group-item"><b>Email: </b> '.$overview['email'].'</li>';
// echo '<li class="list-group-item"><a href=mailto:'.$overview['email'].'?subject=About your contribution nb '.$_GET['idnb'].'><b>Contact the author</b></a></li>';
echo '<li class="list-group-item"><a href=mailto:'.$overview['email'].'?subject=><b>Contact the author</b></a></li>';
}
?>
<p>
<h4>
<a href="mailto:[email protected]?subject=error dbb Agrogeophysic" class="btn btn-primary"> Report an error </a>
</h4>
</p>
</div>
</div>
</div>
</div>
</section>
<?php
}
?>
<!------------------------------------- MODEL CONTRIB ------------------------------------ -->
<?php
if ($overview['contrib_type']=='Notebook')
{
?>
<section id="about">
<div class="container">
<div class="row">
<div class="col-lg-5 col-md-6" >
<div class="sticky-top">
<h2>Contribution overview</h2>
<ul class="list-group">
<?php
if (is_null($overview['icon_img']))
{
// echo '****************************************';
echo '<div class="about-img"><p><img src="dbb/SC_icons/Eco_leaves_nature-512.png" width="100"><p></div>';
}
else
{
echo '<div class="caption"><h3><img src="dbb/M_models/agrogeophy-notebooks/icon_img/'.$overview['icon_img'].'" width="250"></h3></div>';
}
?>
<?php
if (!empty($overview['contrib_type']))
{
echo '<li class="list-group-item"><b>Type:</b> '.$overview['contrib_type'].'</li>';
}
if (!empty($overview['method']))
{
echo '<li class="list-group-item"><b>Keywords: </b> '.$overview['keywords'].'</li>';
}
if (!empty($overview['DOI']))
{
echo '<li class="list-group-item"><a href="https://dx.doi.org/'.$overview['DOI'].'" target="_blank"><b>Link to publication</b></a></li>';
}
?>
</ul>
<h2>Contact description</h2>
<ul class="list-group">
<?php
if (!empty($overview['name']))
{
echo '<li class="list-group-item"><b>Contrib. Author: </b> '.$overview['surname'].' '.$overview['name'].'</li>';
}
if (!empty($overview['email']))
{
echo '<li class="list-group-item"><b>Email: </b> '.$overview['email'].'</li>';
echo '<li class="list-group-item"><a href=mailto:'.$overview['email'].'?subject=><b>Contact the author</b></a></li>';
}
?>
</ul>
<?php
if (!empty($overview['notebook_filename']))
{
echo '<h4><a href=https://mybinder.org/v2/gh/agrogeophy/notebooks/master?filepath=notebooks/'.$overview['notebook_filename'].' class="btn btn-primary" target="_blank"> Try model in binder </a></h4>';
// echo '<h4><a href=https://mybinder.org/v2/gh/BenjMy/agrogeophy-notebooks.git/master?filepath=.%2Fnotebooks%2F'.$overview['notebook_file'].'.ipynb class="btn btn-primary" target="_blank"> Download Notebook </a></h4>';
include('./dbb/M_models/agrogeophy-notebooks/html/'.$overview['notebook_filename'].'.html');
}
else
{
echo '<h4><a href=https://mybinder.org/v2/gh/BenjMy/agrogeophy-notebooks.git/master?filepath=.%2Fnotebooks%2FLorenz.ipynb class="btn btn-primary" target="_blank"> Try example model in binder </a></h4>';
include('./dbb/M_models/agrogeophy-notebooks/html/Lorenz.html');
}
?>
</div>
</div>
</div>
<p>
<h4><a href="mailto:[email protected]?subject=error dbb Agrogeophysic" class="btn btn-primary"> Report an error </a></h4>
</p>
</div>
</section>
<?php
}
?>
<!------------------------------------- DATASET CONTRIB ------------------------------------ -->
<?php
if ($overview['contrib_type']=='Dataset')
{
?>
<section id="about">
<div class="container">
<div class="row">
<div class="sticky-top">
<ul class="list-group">
<h1>
<?php echo $overview['contrib_title']; ?>
</h1>
</ul>
<ul class="list-group">
<?php
if (!empty($overview['DOI']))
{
echo '<h4><a href='.$overview['DOI'].' class="btn btn-primary" target="_blank"> Link to data repo or code to reproduce dataset </a></h4>';
}
else
{
echo 'no journal file found';
}
?>
</ul>
<ul class="list-group">
<?php
if (!empty($overview['journal_file']))
{
echo '<h4><a href=https://github.com/BenjMy/agrogeophy-data/raw/master/try-reda-master/'.$overview['journal_file'].' class="btn btn-primary" target="_blank"> Download metadata journal file </a></h4>';
}
else
{
echo 'no journal file found';
}
?>
</ul>
<h2>Contact description</h2>
<ul class="list-group">
<?php
if (!empty($overview['name']))
{
echo '<li class="list-group-item"><b>Contrib. Author: </b> '.$overview['surname'].' '.$overview['name'].'</li>';
}
if (!empty($overview['email']))
{
echo '<li class="list-group-item"><b>Email: </b> '.$overview['email'].'</li>';
echo '<li class="list-group-item"><a href=mailto:'.$overview['email'].'?subject=><b>Contact the author</b></a></li>';
}
?>
<p>
<h4><a href="mailto:[email protected]?subject=error dbb Agrogeophysic" class="btn btn-primary"> Report an error </a></h4>
</p>
</div>
</section>
<?php
}
?>
<script type="text/javascript">
document.getElementById ("Download_JSON").addEventListener ("click", DownloadJSON, false);
function DownloadJSON(exportObj, exportName){
var dataStr = "data:text/json;charset=utf-8," + encodeURIComponent(JSON.stringify(<?php echo json_encode($json_data) ?>));
var downloadAnchorNode = document.createElement('a');
downloadAnchorNode.setAttribute("href", dataStr);
downloadAnchorNode.setAttribute("download", exportName + ".json");
document.body.appendChild(downloadAnchorNode); // required for firefox
downloadAnchorNode.click();
downloadAnchorNode.remove();
}
</script>
<script type="text/javascript">
document.getElementById ("Download_XML").addEventListener ("click", DownloadXML, false);
function DownloadXML(exportObj, exportName){
var dataStr = "data:text/json;charset=utf-8," + encodeURIComponent(JSON_PRETTY(JSON.stringify(<?php echo xmlrpc_encode($json_data) ?>)));
var downloadAnchorNode = document.createElement('a');
downloadAnchorNode.setAttribute("href", dataStr);
downloadAnchorNode.setAttribute("download", exportName + ".json");
document.body.appendChild(downloadAnchorNode); // required for firefox
downloadAnchorNode.click();
downloadAnchorNode.remove();
}
</script>
</body>
</html>