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Path error in MPI benchmark #16

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domcharrier opened this issue Jan 20, 2020 · 0 comments
Open

Path error in MPI benchmark #16

domcharrier opened this issue Jan 20, 2020 · 0 comments
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bug Something isn't working

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@domcharrier
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System information

  • Ubuntu 18.04 LTS
  • MI50
  • EPYC 7742

Describe the bug

Running the OpenMPI benchmarks result in a crash due to command
mkdir -p /RET_MPI/omb.

A folder RET_MPI exists in the RET root directory. I suspect
the above path should point to this directory.

To Reproduce:

# cd <RET-root>
sudo ./ret install rocm
sudo ./ret install mpi

Expected behavior

Benchmarks complete without errors.

Additional context / logs

log/ret.log

[2020.01.20  @ 12:00:53:780283254] [DON] Build Open MPI completed successfully. []
[2020.01.20  @ 12:00:53:798066022] [DON] Install Completed Successfully. []
[2020.01.20  @ 12:00:53:817972288] [SUB] \e[0K⡇ Run mpi Post-Installation: Setting PATH and LD_LIBRARY_PATH in /etc/profile.d/mpi.sh  []
[2020.01.20  @ 12:00:53:817237087] [CMD] echo 'export PATH=/home/hpcuser/work/RET/RET_MPI/RET_MPI/ompi/bin:/home/hpcuser/work/RET/RET_MPI/RET_MPI/ucx/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin' | tee -a /etc/profile.d/mpi.sh [runCmd]
[2020.01.20  @ 12:00:53:836970005] [OUT] export PATH=/home/hpcuser/work/RET/RET_MPI/RET_MPI/ompi/bin:/home/hpcuser/work/RET/RET_MPI/RET_MPI/ucx/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin
[2020.01.20  @ 12:00:53:854840308] [CMD] echo 'export LD_LIBRARY_PATH=/home/hpcuser/work/RET/RET_MPI/RET_MPI/ompi/lib:/home/hpcuser/work/RET/RET_MPI/RET_MPI/ucx/lib:/home/hpcuser/work/RET/RET_MPI/RET_MPI/gdrcopy/lib64:' | tee -a /etc/profile.d/mpi.sh [runCmd]
[2020.01.20  @ 12:00:53:874062610] [OUT] export LD_LIBRARY_PATH=/home/hpcuser/work/RET/RET_MPI/RET_MPI/ompi/lib:/home/hpcuser/work/RET/RET_MPI/RET_MPI/ucx/lib:/home/hpcuser/work/RET/RET_MPI/RET_MPI/gdrcopy/lib64:
[2020.01.20  @ 12:00:53:891704371] [CMD] source /etc/profile.d/mpi.sh [runCmd]
[2020.01.20  @ 12:00:53:913592327] [INF] Run OSU MPI benchmark? [Y/n] [Y]
[2020.01.20  @ 12:00:53:937328920] [SUB] \e[0K⡇ Setting up OSU MPI Benchmark []
[2020.01.20  @ 12:00:53:936121907] [CMD] su -p hpcuser -c 'rm -fr /RET_MPI/omb' [runCmd]
[2020.01.20  @ 12:00:53:964838774] [CMD] su -p hpcuser -c 'mkdir -p /RET_MPI/omb' [runCmd]
[2020.01.20  @ 12:00:53:992012210] [OUT] mkdir: cannot create directory '/RET_MPI': Permission denied
[2020.01.20  @ 12:00:54:009803224] [ERR] An error occurred while executing the command! [su -p hpcuser -c 'mkdir -p /RET_MPI/omb']  
@domcharrier domcharrier added the bug Something isn't working label Jan 20, 2020
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