diff --git a/inst/ChangeLog b/inst/ChangeLog index e7babff..e527a39 100644 --- a/inst/ChangeLog +++ b/inst/ChangeLog @@ -1,3 +1,71 @@ +2024-06-19 edzer + + * .github/workflows/rcmdcheck.yml: update tlmgr + +2024-06-19 edzer + + * R/panel.pointPairs.R, R/predict.gstat.R, R/variogram.gstat.R, + R/variogramST.R: along -> along.with + +2024-03-26 edzer + + * tests/unproj.R, tests/unproj.Rout.save: clean test noise output + +2024-03-21 edzer + + * : commit c8be3e8e2c5adc18c0834fee62ebaaf2cbe63112 Author: edzer + Date: Thu Mar 21 19:32:27 2024 + +0100 + +2024-03-14 Edzer Pebesma + + * : Merge pull request #139 from AMBarbosa/main vgm: state that 'model' can be a chr vector + +2024-02-21 Edzer Pebesma + + * : Merge pull request #138 from kadyb/main fix URL in README + +2024-02-21 Edzer Pebesma + + * : Merge pull request #136 from kadyb/main Create new rcmdcheck workflow + +2024-02-17 Krzysztof Dyba <35004826+kadyb@users.noreply.github.com> + + * .travis.yml: Delete .travis.yml + +2024-02-17 Krzysztof Dyba <35004826+kadyb@users.noreply.github.com> + + * tic.R: Delete tic.R + +2024-02-17 Krzysztof Dyba <35004826+kadyb@users.noreply.github.com> + + * .github/workflows/tic.yml: Delete .github/workflows/tic.yml + +2024-02-17 Krzysztof Dyba <35004826+kadyb@users.noreply.github.com> + + * .github/workflows/rcmdcheck.yml: add LaTeX package + +2024-02-17 Krzysztof Dyba <35004826+kadyb@users.noreply.github.com> + + * .github/workflows/rcmdcheck.yml: add LaTeX package + +2024-02-17 Krzysztof Dyba <35004826+kadyb@users.noreply.github.com> + + * .github/workflows/rcmdcheck.yml: install LaTeX packages + +2024-02-17 Krzysztof Dyba <35004826+kadyb@users.noreply.github.com> + + * .github/workflows/rcmdcheck.yml: add TinyTeX + +2024-02-17 Krzysztof Dyba <35004826+kadyb@users.noreply.github.com> + + * .github/workflows/rcmdcheck.yml: create rcmdcheck workflow + +2024-01-21 edzer + + * .Rbuildignore, R/variogramST.R, inst/ChangeLog: allow non-POSIXct + and non-Date times; #135 + 2024-01-17 edzer * .github/workflows/tic.yml: update diff --git a/man/krigeST.Rd b/man/krigeST.Rd index 2392524..fe2a996 100644 --- a/man/krigeST.Rd +++ b/man/krigeST.Rd @@ -73,7 +73,7 @@ krigeSTTg(formula, data, newdata, modelList, y, nmax=Inf, stAni=NULL, \value{ An object of the same class as \code{newdata} (deriving from - \code{\linkS4class{ST}}). Attributes columns contain prediction and prediction + \code{\link[spacetime:ST-class]{ST}}). Attributes columns contain prediction and prediction variance. } @@ -88,8 +88,7 @@ Wiley. \url{http://www.gstat.org/} Pebesma, E.J., 2004. Multivariable geostatistics in S: the gstat package. -Computers and Geosciences, 30: 683-691. -} +Computers and Geosciences, 30: 683-691. } \author{ Edzer Pebesma, Benedikt Graeler } \seealso{ \code{\link{krige0}}, \code{\link{gstat}}, \code{\link[gstat]{predict}}, \code{\link{krigeTg}} } diff --git a/man/krigeTg.Rd b/man/krigeTg.Rd index 3042231..1222f2c 100644 --- a/man/krigeTg.Rd +++ b/man/krigeTg.Rd @@ -45,7 +45,7 @@ krigeTg(formula, locations, newdata, model = NULL, ..., } \details{ Function \code{krigeTg} uses transGaussian kriging as explained in -\url{http://www.math.umd.edu/~bnk/bak/Splus/kriging.html}. +\url{https://www.math.umd.edu/~bnk/bak/Splus/kriging.html}. As it uses the R/gstat krige function to derive everything, it needs in addition to ordinary kriging on the transformed scale a simple kriging diff --git a/man/plot.gstatVariogram.Rd b/man/plot.gstatVariogram.Rd index fa6d0b2..8124cb4 100644 --- a/man/plot.gstatVariogram.Rd +++ b/man/plot.gstatVariogram.Rd @@ -41,7 +41,7 @@ graph, using color, colored lines and symbols to distinguish them } each plotted semivariance symbol, if FALSE these are omitted. If numeric, TRUE is assumed and the value is passed as the relative distance to be used between symbols and numeric text values (default 0.03). } -\item{scales}{ optional argument that will be passed to \code{xyplot} in +\item{scales}{ optional argument that will be passed to \code{\link[lattice]{xyplot}} in case of the plotting of variograms and cross variograms; use the value \code{list(relation = "same")} if y-axes need to share scales } \item{ids}{ ids of the data variables and variable pairs } @@ -49,7 +49,7 @@ case of the plotting of variograms and cross variograms; use the value if TRUE, panels divide direction and colors indicate variables (ids), if FALSE panels divide variables/variable pairs and colors indicate direction} -\item{skip}{ logical; can be used to arrange panels, see \code{xyplot}} +\item{skip}{ logical; can be used to arrange panels, see \code{\link[lattice]{xyplot}}} \item{layout}{ integer vector; can be used to set panel layout: c(ncol,nrow) } \item{np}{ logical (only for plotting variogram maps); if TRUE, plot number of point pairs, if FALSE plot semivariances } @@ -62,7 +62,7 @@ than threshold will not be plotted} \item{convertMonths}{logical; if TRUE, \code{yearmon} time lags will be unit converted and plotted as (integer) months, and no longer match the numeric representation of \code{yearmon}, which has years as unit } -\item{as.table}{controls the plotting order for multiple panels, see \code{\link{xyplot}} for details.} +\item{as.table}{controls the plotting order for multiple panels, see \code{\link[lattice]{xyplot}} for details.} \item{wireframe}{logical; if TRUE, produce a wireframe plot} \item{diff}{logical; if TRUE, plot difference between model and sample variogram; ignores \code{all}.} \item{all}{logical; if TRUE, plot sample and model variogram(s) in single wireframes.} diff --git a/man/variogramST.Rd b/man/variogramST.Rd index 16f39f1..f7b5701 100644 --- a/man/variogramST.Rd +++ b/man/variogramST.Rd @@ -15,10 +15,10 @@ variogramST(formula, locations, data, ..., tlags = 0:15, cutoff, \item{locations}{A STFDF or STSDF containing the variable; kept for compatibility reasons with variogram, either \code{locations} or \code{data} must be provided.} -\item{data}{A \code{\linkS4class{STFDF}}, \code{\linkS4class{STSDF}} or \code{\linkS4class{STIDF}} containing the variable.} +\item{data}{A \code{\link[spacetime:STFDF-class]{STFDF}}, \code{\link[spacetime:STSDF-class]{STSDF}} or \code{\link[spacetime:STIDF]{STIDF}} containing the variable.} \item{...}{any other arguments that will be passed to the underlying - \code{\link{variogram}} function. In case of using data of type \code{\linkS4class{STIDF}}, the argument \code{tunit} is recommended (and only used in the case of STIDF) to set the temporal unit of the \code{tlags}. Additionally, \code{twindow} can be passed to control the temporal window used for temporal distance calculations. This builds on the property of xts being ordered and only the next \code{twindow} instances are considered. This avoids the need of huge temporal distance matrices. The default uses twice the number as the average difference goes into the temporal cutoff.} -\item{tlags}{ integer; time lags to consider or in case \code{data} is of class \code{\linkS4class{STIDF}} the actual temporal boundaries with time unit given by \code{tunit} otherwise the same unit as \code{\link{diff}} on the index of the time slot will generate is assumed.} + \code{\link{variogram}} function. In case of using data of type \code{\link[spacetime:STIDF-class]{STIDF}}, the argument \code{tunit} is recommended (and only used in the case of STIDF) to set the temporal unit of the \code{tlags}. Additionally, \code{twindow} can be passed to control the temporal window used for temporal distance calculations. This builds on the property of xts being ordered and only the next \code{twindow} instances are considered. This avoids the need of huge temporal distance matrices. The default uses twice the number as the average difference goes into the temporal cutoff.} +\item{tlags}{ integer; time lags to consider or in case \code{data} is of class \code{\link[spacetime:STIDF-class]{STIDF}} the actual temporal boundaries with time unit given by \code{tunit} otherwise the same unit as \code{\link{diff}} on the index of the time slot will generate is assumed.} \item{cutoff}{ spatial separation distance up to which point pairs are included in semivariance estimates; as a default, the length of the diagonal of the box spanning the data is divided by three. } diff --git a/man/vgm.panel.Rd b/man/vgm.panel.Rd index 245d93d..bcab287 100644 --- a/man/vgm.panel.Rd +++ b/man/vgm.panel.Rd @@ -39,7 +39,7 @@ panel.pointPairs(x, y, type = "p", pch = plot.symbol$pch, col, col.line = \item{line.pch}{ symbol type to be used for point of selected point pairs, e.g. to highlight point pairs with distance close to zero } \item{pairs}{ two-column matrix with pair indexes to be highlighted } -\item{...}{ parameters that get passed to \link{lpoints} } +\item{...}{ parameters that get passed to \link[lattice]{lpoints} } } \value{ ignored; the enclosing function returns a plot of class \code{trellis}