From db967f24a80e86a346eb0c35d642bc2c9fa96f73 Mon Sep 17 00:00:00 2001 From: DavisVaughan Date: Fri, 20 Jan 2023 16:00:46 -0500 Subject: [PATCH] Update revdep checks --- revdep/README.md | 33 +- revdep/cran.md | 30 +- revdep/failures.md | 998 ++------------------------------------------- revdep/problems.md | 152 +------ 4 files changed, 47 insertions(+), 1166 deletions(-) diff --git a/revdep/README.md b/revdep/README.md index 9bf0437fd..77762c863 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,37 +1,10 @@ # Revdeps -## Failed to check (22) +## Failed to check (3) |package |version |error |warning |note | |:-------------|:-------|:-----|:-------|:----| |NA |? | | | | -|NA |? | | | | -|elbird |0.2.5 |1 | | | -|ggPMX |? | | | | -|NA |? | | | | -|loon.ggplot |? | | | | -|loon.shiny |? | | | | -|NA |? | | | | -|NA |? | | | | -|NA |? | | | | -|nlmixr2plot |? | | | | -|NA |? | | | | -|NA |? | | | | -|Platypus |? | | | | -|NA |? | | | | -|NA |? | | | | -|NA |? | | | | -|NA |? | | | | -|tidySEM |? | | | | -|NA |? | | | | -|vivid |? | | | | -|xpose.nlmixr2 |? | | | | - -## New problems (3) - -|package |version |error |warning |note | -|:------------|:-------|:------|:-------|:----| -|[globaltrends](problems.md#globaltrends)|0.0.12 |__+1__ | | | -|[goldilocks](problems.md#goldilocks)|0.3.0 |__+1__ | | | -|[psfmi](problems.md#psfmi)|1.0.0 |__+1__ |__+1__ |1 | +|tidybayes |? | | | | +|tidyposterior |? | | | | diff --git a/revdep/cran.md b/revdep/cran.md index 3de654e88..597743524 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,33 +1,13 @@ ## revdepcheck results -We checked 3743 reverse dependencies (3730 from CRAN + 13 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 217 reverse dependencies (216 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 3 new problems - * We failed to check 9 packages + * We saw 0 new problems + * We failed to check 2 packages Issues with CRAN packages are summarised below. -### New problems -(This reports the first line of each new failure) - -* globaltrends - checking tests ... ERROR - -* goldilocks - checking tests ... ERROR - -* psfmi - checking examples ... ERROR - checking re-building of vignette outputs ... WARNING - ### Failed to check -* elbird (NA) -* ggPMX (NA) -* loon.ggplot (NA) -* loon.shiny (NA) -* nlmixr2plot (NA) -* Platypus (NA) -* tidySEM (NA) -* vivid (NA) -* xpose.nlmixr2 (NA) +* tidybayes (NA) +* tidyposterior (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 0af7bf749..0e4698947 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -33,933 +33,17 @@ Run `cloud_details(, "NA")` for more info ``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# elbird - -
- -* Version: 0.2.5 -* GitHub: https://github.com/mrchypark/elbird -* Source code: https://github.com/cran/elbird -* Date/Publication: 2022-08-12 15:50:02 UTC -* Number of recursive dependencies: 54 - -Run `cloud_details(, "elbird")` for more info - -
- -## In both - -* checking whether package ‘elbird’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/elbird/new/elbird.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘elbird’ ... -** package ‘elbird’ successfully unpacked and MD5 sums checked -** using staged installation -/usr/bin/uname -Prior system libkiwi installation not found -Preparing to download and build library from source... -------------------------------[ ELBIRD ]------------------------------ -Configuration failed because 'git' was not found. -If you want to kiwi build from source in package installation prosess, -make sure git and cmake work in system. -------------------------------------------------------------------------- -ERROR: configuration failed for package ‘elbird’ -* removing ‘/tmp/workdir/elbird/new/elbird.Rcheck/elbird’ - - -``` -### CRAN - -``` -* installing *source* package ‘elbird’ ... -** package ‘elbird’ successfully unpacked and MD5 sums checked -** using staged installation -/usr/bin/uname -Prior system libkiwi installation not found -Preparing to download and build library from source... -------------------------------[ ELBIRD ]------------------------------ -Configuration failed because 'git' was not found. -If you want to kiwi build from source in package installation prosess, -make sure git and cmake work in system. -------------------------------------------------------------------------- -ERROR: configuration failed for package ‘elbird’ -* removing ‘/tmp/workdir/elbird/old/elbird.Rcheck/elbird’ - - -``` -# ggPMX - -
- -* Version: 1.2.8 -* GitHub: https://github.com/ggPMXdevelopment/ggPMX -* Source code: https://github.com/cran/ggPMX -* Date/Publication: 2022-06-17 23:10:02 UTC -* Number of recursive dependencies: 208 - -Run `cloud_details(, "ggPMX")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/ggPMX/new/ggPMX.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ggPMX/DESCRIPTION’ ... OK -* this is package ‘ggPMX’ version ‘1.2.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... - [ FAIL 1 | WARN 11 | SKIP 8 | PASS 327 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/ggPMX/old/ggPMX.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ggPMX/DESCRIPTION’ ... OK -* this is package ‘ggPMX’ version ‘1.2.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... - [ FAIL 1 | WARN 11 | SKIP 8 | PASS 327 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 2 NOTEs - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# loon.ggplot - -
- -* Version: 1.3.2 -* GitHub: https://github.com/great-northern-diver/loon.ggplot -* Source code: https://github.com/cran/loon.ggplot -* Date/Publication: 2022-10-03 14:50:02 UTC -* Number of recursive dependencies: 104 - -Run `cloud_details(, "loon.ggplot")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘loon.ggplot’ version ‘1.3.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘loon’ - -Package suggested but not available for checking: ‘zenplots’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘loon.ggplot’ version ‘1.3.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘loon’ - -Package suggested but not available for checking: ‘zenplots’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# loon.shiny - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/loon.shiny -* Date/Publication: 2022-10-08 15:30:02 UTC -* Number of recursive dependencies: 132 - -Run `cloud_details(, "loon.shiny")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/loon.shiny/new/loon.shiny.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.shiny/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘loon.shiny’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'loon', 'loon.ggplot' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/loon.shiny/old/loon.shiny.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.shiny/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘loon.shiny’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'loon', 'loon.ggplot' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# nlmixr2plot - -
- -* Version: 2.0.6 -* GitHub: https://github.com/nlmixr2/nlmixr2plot -* Source code: https://github.com/cran/nlmixr2plot -* Date/Publication: 2022-05-23 07:50:02 UTC -* Number of recursive dependencies: 198 - -Run `cloud_details(, "nlmixr2plot")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/nlmixr2plot/new/nlmixr2plot.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘nlmixr2plot/DESCRIPTION’ ... OK -* this is package ‘nlmixr2plot’ version ‘2.0.6’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'nlmixr2est', 'nlmixr2extra' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/nlmixr2plot/old/nlmixr2plot.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘nlmixr2plot/DESCRIPTION’ ... OK -* this is package ‘nlmixr2plot’ version ‘2.0.6’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'nlmixr2est', 'nlmixr2extra' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# Platypus - -
- -* Version: 3.4.1 -* GitHub: NA -* Source code: https://github.com/cran/Platypus -* Date/Publication: 2022-08-15 07:20:20 UTC -* Number of recursive dependencies: 355 - -Run `cloud_details(, "Platypus")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/Platypus/new/Platypus.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Platypus/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘Platypus’ version ‘3.4.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘PlatypusV3_agedCNS.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/Platypus/old/Platypus.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Platypus/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘Platypus’ version ‘3.4.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘PlatypusV3_agedCNS.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# tidySEM - -
- -* Version: 0.2.3 -* GitHub: https://github.com/cjvanlissa/tidySEM -* Source code: https://github.com/cran/tidySEM -* Date/Publication: 2022-04-14 17:50:02 UTC -* Number of recursive dependencies: 170 - -Run `cloud_details(, "tidySEM")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tidySEM/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘tidySEM’ version ‘0.2.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK - ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK - ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK - ‘sem_graph.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tidySEM/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘tidySEM’ version ‘0.2.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK - ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK - ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK - ‘sem_graph.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# vivid +# tidybayes
-* Version: 0.2.3 -* GitHub: NA -* Source code: https://github.com/cran/vivid -* Date/Publication: 2021-11-20 01:30:02 UTC -* Number of recursive dependencies: 201 +* Version: 3.0.2 +* GitHub: https://github.com/mjskay/tidybayes +* Source code: https://github.com/cran/tidybayes +* Date/Publication: 2022-01-05 06:10:02 UTC +* Number of recursive dependencies: 206 -Run `cloud_details(, "vivid")` for more info +Run `cloud_details(, "tidybayes")` for more info
@@ -968,24 +52,24 @@ Run `cloud_details(, "vivid")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/vivid/new/vivid.Rcheck’ +* using log directory ‘/tmp/workdir/tidybayes/new/tidybayes.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘vivid/DESCRIPTION’ ... OK -* this is package ‘vivid’ version ‘0.2.3’ +* checking for file ‘tidybayes/DESCRIPTION’ ... OK +* this is package ‘tidybayes’ version ‘3.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE ... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... NONE - ‘vivid.Rmd’ using ‘UTF-8’... OK - ‘vividQStart.Rmd’ using ‘UTF-8’... OK + ‘tidy-brms.Rmd’ using ‘UTF-8’... OK + ‘tidy-posterior.Rmd’ using ‘UTF-8’... OK + ‘tidy-rstanarm.Rmd’ using ‘UTF-8’... OK + ‘tidybayes-residuals.Rmd’ using ‘UTF-8’... OK + ‘tidybayes.Rmd’ using ‘UTF-8’... OK * checking re-building of vignette outputs ... OK * DONE Status: 2 NOTEs @@ -998,24 +82,24 @@ Status: 2 NOTEs ### CRAN ``` -* using log directory ‘/tmp/workdir/vivid/old/vivid.Rcheck’ +* using log directory ‘/tmp/workdir/tidybayes/old/tidybayes.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘vivid/DESCRIPTION’ ... OK -* this is package ‘vivid’ version ‘0.2.3’ +* checking for file ‘tidybayes/DESCRIPTION’ ... OK +* this is package ‘tidybayes’ version ‘3.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE ... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... NONE - ‘vivid.Rmd’ using ‘UTF-8’... OK - ‘vividQStart.Rmd’ using ‘UTF-8’... OK + ‘tidy-brms.Rmd’ using ‘UTF-8’... OK + ‘tidy-posterior.Rmd’ using ‘UTF-8’... OK + ‘tidy-rstanarm.Rmd’ using ‘UTF-8’... OK + ‘tidybayes-residuals.Rmd’ using ‘UTF-8’... OK + ‘tidybayes.Rmd’ using ‘UTF-8’... OK * checking re-building of vignette outputs ... OK * DONE Status: 2 NOTEs @@ -1025,17 +109,17 @@ Status: 2 NOTEs ``` -# xpose.nlmixr2 +# tidyposterior
-* Version: 0.4.0 -* GitHub: NA -* Source code: https://github.com/cran/xpose.nlmixr2 -* Date/Publication: 2022-06-08 09:10:02 UTC -* Number of recursive dependencies: 204 +* Version: 1.0.0 +* GitHub: https://github.com/tidymodels/tidyposterior +* Source code: https://github.com/cran/tidyposterior +* Date/Publication: 2022-06-23 20:20:02 UTC +* Number of recursive dependencies: 170 -Run `cloud_details(, "xpose.nlmixr2")` for more info +Run `cloud_details(, "tidyposterior")` for more info
@@ -1044,20 +128,17 @@ Run `cloud_details(, "xpose.nlmixr2")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/xpose.nlmixr2/new/xpose.nlmixr2.Rcheck’ +* using log directory ‘/tmp/workdir/tidyposterior/new/tidyposterior.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘xpose.nlmixr2/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘xpose.nlmixr2’ version ‘0.4.0’ +* checking for file ‘tidyposterior/DESCRIPTION’ ... OK +* this is package ‘tidyposterior’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘nlmixr2est’ - -Package suggested but not available for checking: ‘nlmixr2’ +Package required but not available: ‘rstanarm’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -1072,20 +153,17 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/xpose.nlmixr2/old/xpose.nlmixr2.Rcheck’ +* using log directory ‘/tmp/workdir/tidyposterior/old/tidyposterior.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘xpose.nlmixr2/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘xpose.nlmixr2’ version ‘0.4.0’ +* checking for file ‘tidyposterior/DESCRIPTION’ ... OK +* this is package ‘tidyposterior’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘nlmixr2est’ - -Package suggested but not available for checking: ‘nlmixr2’ +Package required but not available: ‘rstanarm’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. diff --git a/revdep/problems.md b/revdep/problems.md index af1985c00..9a2073633 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,151 +1 @@ -# globaltrends - -
- -* Version: 0.0.12 -* GitHub: https://github.com/ha-pu/globaltrends -* Source code: https://github.com/cran/globaltrends -* Date/Publication: 2022-06-23 07:10:11 UTC -* Number of recursive dependencies: 108 - -Run `cloud_details(, "globaltrends")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘test_functions.r’ - Running ‘testthat.r’ - Running the tests in ‘tests/testthat.r’ failed. - Last 13 lines of output: - Error in `initialize_db()`: Error: File 'db/globaltrends_db.sqlite' already exists. - Backtrace: - ▆ - 1. └─globaltrends::initialize_db() at test-plot_voi_doi.R:8:0 - ── Error ('test-synonyms.R:8'): (code run outside of `test_that()`) ──────────── - Error in `initialize_db()`: Error: File 'db/globaltrends_db.sqlite' already exists. - Backtrace: - ▆ - 1. └─globaltrends::initialize_db() at test-synonyms.R:8:0 - - [ FAIL 15 | WARN 22 | SKIP 0 | PASS 33 ] - Error: Test failures - In addition: Warning message: - call dbDisconnect() when finished working with a connection - Execution halted - ``` - -# goldilocks - -
- -* Version: 0.3.0 -* GitHub: NA -* Source code: https://github.com/cran/goldilocks -* Date/Publication: 2021-05-10 08:20:11 UTC -* Number of recursive dependencies: 68 - -Run `cloud_details(, "goldilocks")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - ══ Skipped tests ═══════════════════════════════════════════════════════════════ - • On CRAN (1) - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Error ('test-survival_adapt.R:54'): survival_adapt-cox ────────────────────── - Error in `if (success > prob_ha) { - expected_success_test <- expected_success_test + 1 - }`: missing value where TRUE/FALSE needed - Backtrace: - ▆ - 1. └─goldilocks::survival_adapt(...) at test-survival_adapt.R:54:2 - - [ FAIL 1 | WARN 2 | SKIP 1 | PASS 17 ] - Error: Test failures - Execution halted - ``` - -# psfmi - -
- -* Version: 1.0.0 -* GitHub: https://github.com/mwheymans/psfmi -* Source code: https://github.com/cran/psfmi -* Date/Publication: 2021-09-23 10:10:05 UTC -* Number of recursive dependencies: 156 - -Run `cloud_details(, "psfmi")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘psfmi-Ex.R’ failed - The error most likely occurred in: - - > ### Name: psfmi_validate - > ### Title: Internal validation and performance of logistic prediction - > ### models across Multiply Imputed datasets - > ### Aliases: psfmi_validate - > - > ### ** Examples - > - ... - ! `strata` should be a single name or character value. - Backtrace: - ▆ - 1. └─psfmi::psfmi_validate(...) - 2. └─psfmi::cv_MI(...) - 3. ├─purrr::map(...) - 4. └─rsample::vfold_cv(data_orig, v = folds, strata = unlist(data_orig[pobj$Outcome])) - 5. └─rsample:::strata_check(strata, data) - 6. └─rlang::abort("`strata` should be a single name or character value.") - Execution halted - ``` - -* checking re-building of vignette outputs ... WARNING - ``` - Error(s) in re-building vignettes: - --- re-building ‘MI_boot.Rmd’ using rmarkdown - --- finished re-building ‘MI_boot.Rmd’ - - --- re-building ‘MI_cv_naive.Rmd’ using rmarkdown - --- finished re-building ‘MI_cv_naive.Rmd’ - - --- re-building ‘Pool_Model_Performance.Rmd’ using rmarkdown - --- finished re-building ‘Pool_Model_Performance.Rmd’ - - ... - --- finished re-building ‘psfmi_StabilityAnalysis.Rmd’ - - --- re-building ‘psfmi_mice.Rmd’ using rmarkdown - --- finished re-building ‘psfmi_mice.Rmd’ - - SUMMARY: processing the following files failed: - ‘cv_MI.Rmd’ ‘cv_MI_RR.Rmd’ ‘development_workflow.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘miceadds’ - All declared Imports should be used. - ``` - +*Wow, no problems at all. :)* \ No newline at end of file