Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

cellranger label likely insufficient resources for cellranger task #16

Open
pedromcruz opened this issue Nov 14, 2021 · 0 comments
Open

cellranger label likely insufficient resources for cellranger task #16

pedromcruz opened this issue Nov 14, 2021 · 0 comments

Comments

@pedromcruz
Copy link

cellranger/main.nf

Line 258 in 46367b4

label 'cellranger'

cellranger task was getting killed, changed to label high_process and completed. I suspect the default mem (7GB) is set too low with label cellranger. In my analysis, it peaked at 46GB.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@pedromcruz