Initial commit

Author: python3-dev

.vscode/launch.json

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+{
+    // Use IntelliSense to learn about possible attributes.
+    // Hover to view descriptions of existing attributes.
+    // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
+    "version": "0.2.0",
+    "configurations": [
+        {
+            "name": "Python: Current File",
+            "type": "python",
+            "request": "launch",
+            "program": "${file}",
+            "console": "integratedTerminal",
+            "justMyCode": true
+        }
+    ]
+}

README.rst

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+TODO
+----
+- Implement cross-over, mutation and elitism
+- Implement environment
+- Implement objective function class
+- Implement fitness checker

mendel/__init__.py

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+__version__ = '0.1.0'

mendel/__pycache__/__init__.cpython-38.pyc

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+"""Chromosome class."""
+
+import struct
+
+from typing import Union, List
+from config.config import Config
+
+
+class Gene:
+    """
+    Gene class.
+
+    Genes represent a variable in the
+    objective function.
+    """
+    def __init__(self, var: Union[float, int]):
+        """__init__ Initialise Gene class.
+
+        Parameters
+        ----------
+        var : Union[float, int]
+            Float or int values representing the phenotype.
+        """
+        self.var: float = float(var)
+        self.hex_string: str = self.__hex_convert()
+        self.bin_string: str = self.__bin_convert()
+        self.length: int = len(self.bin_string)
+
+    def __hex_convert(self) -> str:
+        """Convert float to hex."""
+        return float.hex(self.var)
+
+    def __bin_convert(self):
+        """
+        Convert float to binary.
+        Source: https://stackoverflow.com/questions/53538504/float-to-binary-and-binary-to-float-in-python
+        """
+        return format(struct.unpack('!I', struct.pack('!f', self.var))[0], f'0{Config.BIT_LENGTH}b')
+
+    def bin_to_float(self):
+        """
+        Convert binary to float.
+        Source: https://stackoverflow.com/questions/53538504/float-to-binary-and-binary-to-float-in-python
+        """
+        return struct.unpack('!f', struct.pack('!I', int(self.bin_string, 2)))[0]
+
+
+class Chromosome:
+    """
+    Chromosome class.
+
+    Chromosomes represents a collection of
+    variables encoded as genes.
+    """
+    def __init__(self) -> None:
+        self.genes: List[Gene] = []
+        self.chromosome_string: str = ''
+        self.length: int = len(self.chromosome_string)
+
+    def add_gene(self, gene: Gene) -> None:
+        self.genes.append(gene)
+
+    def generate_chromosome_string(self) -> None:
+        for gene in self.genes:
+            self.chromosome_string += gene.bin_string
+        self.__determine_chromosome_length()
+
+    def __determine_chromosome_length(self) -> None:
+        self.length = len(self.chromosome_string)
+
+
+class Environment:
+    """
+    Environment class.
+
+    Chromosomes interact with each other
+    in Environment class.
+    """
+    def __init__(self) -> None:
+        self.population: List[Chromosome] = []
+        self.max_population: int = 100
+        self.mutation: float = 0.1
+        self.elitism: bool = True
+        self.elite_preservation: float = 0.1
+
+
+
+if __name__ == '__main__':
+    x_2 = Gene(1)
+    print(x_2.bin_string)
+    print(x_2.bin_to_float())
+    x_2 = Gene(-1)
+    print(x_2.bin_string)
+    print(x_2.bin_to_float())

mendel/__pycache__/app.cpython-38.pyc

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+class Config:
+    BIT_LENGTH: int = 16
+    HEX_LENGTH: int = 16