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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

[0.0.8] - 11.10.2020

Added

  • Initial online documentation;

Changed

  • Migrated the codebase to Python 3.8+;

[0.0.7] - 18.09.2020

Added

  • new extention for embedding module with ESM transformer-based protein embedding model;

Changed

  • requirements.txt updated;
  • Updated README.md;

[0.0.6] - 01.09.2020

Added

  • K-mer transformer with parallelization support;
  • Embedding for bacteriophages nucleotides with new Example in Jupyter Notebook format;

Changed

  • requirements.txt with pandarallel, scikit-learn, gensim and numpy;

[0.0.5] - 27.08.2020

Added

  • Initial Travis CI integration;
  • Bacteriophage structural protein classifier;

Changed

  • Updated README.md;

[0.0.4] - 24.08.2020

Added

  • Examples in Jupyter Notebook format;

Changed

  • Improved setup.py script and dependencies;
  • Updated README.md;

[0.0.3] - 24.08.2020

Changed

  • Added setup.py script for Python Index Packages (PyPI);

[0.0.2] - 20.08.2020

Added

  • embedding module with BERT pre-trained embedding model for proteins with support for single protein vectorization as well as for proteins sets which are averagend to bacteriophage level;

[0.0.1] - 10.08.2020

Added

  • features module with protein-based (amino-acid) feature extractor for single protein sequence as well as for multifasta;
  • crawlers module with MillardLab website support;

Changed

  • requirements.txt with fake-useragent, biopython, lxml, python-requests and pandas;