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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(extract_ott_ids,default)
S3method(summary,datelifeResult)
S3method(summary,matchedCalibrations)
S3method(tnrs_match,default)
S3method(tnrs_match,phylo)
export(build_grove_list)
export(build_grove_matrix)
export(check_ott_input)
export(choose_cluster)
export(classification_paths_from_taxonomy)
export(clean_ott_chronogram)
export(clean_taxon_info_children)
export(clean_tnrs)
export(cluster_patristicmatrix)
export(congruify_and_mrca_multiPhylo)
export(congruify_and_mrca_phylo)
export(date_with_pbdb)
export(datelife_authors_tabulate)
export(datelife_result_median)
export(datelife_result_median_matrix)
export(datelife_result_sdm_matrix)
export(datelife_result_sdm_phylo)
export(datelife_result_variance_matrix)
export(datelife_search)
export(datelife_use)
export(datelife_use_datelifequery)
export(extract_calibrations_dateliferesult)
export(extract_calibrations_phylo)
export(extract_ott_ids)
export(filter_for_grove)
export(force_ultrametric)
export(get_all_calibrations)
export(get_all_descendant_species)
export(get_best_grove)
export(get_biggest_multiphylo)
export(get_bold_data)
export(get_calibrations_datelifequery)
export(get_calibrations_vector)
export(get_dated_otol_induced_subtree)
export(get_datelife_result)
export(get_datelife_result_datelifequery)
export(get_fossil_range)
export(get_goodmatrices)
export(get_mrbayes_node_constraints)
export(get_opentree_chronograms)
export(get_opentree_species)
export(get_otol_chronograms)
export(get_otol_synthetic_tree)
export(get_ott_children)
export(get_ott_clade)
export(get_ott_lineage)
export(get_taxon_summary)
export(get_tnrs_names)
export(get_valid_children)
export(input_process)
export(is_datelife_query)
export(is_datelife_result_empty)
export(is_good_chronogram)
export(is_n_overlap)
export(make_bladj_tree)
export(make_bold_otol_tree)
export(make_contributor_cache)
export(make_datelife_query)
export(make_datelife_query2)
export(make_mrbayes_runfile)
export(make_mrbayes_tree)
export(make_overlap_table)
export(make_sdm)
export(make_treebase_cache)
export(map_nodes_ott)
export(matrices_to_table)
export(matrix_to_table)
export(missing_taxa_check)
export(mrca_calibrations)
export(patristic_matrix_to_newick)
export(patristic_matrix_to_phylo)
export(patristic_matrix_unpad)
export(phylo_check)
export(phylo_generate_uncertainty)
export(phylo_get_node_numbers)
export(phylo_has_brlen)
export(pick_grove)
export(recover_mrcaott)
export(relevant_curators_tabulate)
export(run)
export(run_mrbayes)
export(sample_trees)
export(summarize_congruifiedCalibrations)
export(summarize_datelife_result)
export(summarize_fossil_range)
export(summary_matrix_to_phylo)
export(summary_matrix_to_phylo_all)
export(tnrs_match)
export(tree_add_nodelabels)
export(tree_add_outgroup)
export(tree_check)
export(tree_fix_brlen)
export(tree_from_taxonomy)
export(tree_get_node_data)
export(tree_get_singleton_outgroup)
export(tree_node_tips)
export(update_datelife_cache)
export(use_all_calibrations)
export(use_calibrations)
export(use_calibrations_bladj)
export(use_calibrations_bladj.matchedCalibrations)
export(use_calibrations_each)
export(use_calibrations_pathd8)
export(use_calibrations_treePL)
importFrom(BiocManager,install)
importFrom(data.table,rbindlist)