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Add a verbose mode for improved debugging #31

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gaurav opened this issue Oct 24, 2018 · 1 comment
Open

Add a verbose mode for improved debugging #31

gaurav opened this issue Oct 24, 2018 · 1 comment
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programming only No discussion necessary; just pure programming needed

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@gaurav
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gaurav commented Oct 24, 2018

It would be useful to have a -v and -vv options for provide verbose and very verbose outputs. We currently provide lots of verbose output to help with debugging; adding these filtering options would allow us to provide cleaner messages by default and still allow the output of detailed debugging information when needed.
gaurav added a commit that referenced this issue Jun 3, 2019
@gaurav
Comment out System.err output that's very debuggy; see #31.
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gaurav commented Jun 3, 2019

We have a bunch of debugging information that we currently write to STDERR. Just changing those over to use log4j should be enough to close this issue.

@gaurav gaurav added the programming only No discussion necessary; just pure programming needed label Aug 8, 2019
@gaurav gaurav mentioned this issue Aug 8, 2019
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gaurav added a commit that referenced this issue Apr 21, 2020
@gaurav
Merge pull request #56 from phyloref/replace-stderr-with-log4j
2041cb6 
This PR replaces most of our System.err calls with calls to the SLF4J logging system. This will make it easier to add debugging information in the future, when we can use verbose flags (`-v`, `-vv`) to provide increasingly detailed debugging information (#31).

Closes #51.
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