Add new test-data

npinter · npinter · commit cee9cd7d22d2 · 2024-02-27T11:18:58.000+01:00
diff --git a/tools/peakzilla/peakzilla.xml b/tools/peakzilla/peakzilla.xml
@@ -73,7 +73,7 @@
         <test expect_num_outputs="1">
             <param name="chip_bed" value="chip.bed" />
             <param name="input_bed" value="input.bed" />
-            <output name="results" file="results.tsv">
+            <output name="results" file="results_1.tsv">
                 <assert_contents>
                     <has_text text="Peak_1" />
                 </assert_contents>
@@ -88,7 +88,7 @@
             <param name="score_cutoff" value="1" />
             <param name="log" value="true" />
             <param name="negative" value="true" />
-            <output name="results" file="results.tsv">
+            <output name="results" file="results_2.tsv">
                 <assert_contents>
                     <has_text text="Peak_1" />
                 </assert_contents>
diff --git a/tools/peakzilla/test-data/log.txt b/tools/peakzilla/test-data/log.txt
@@ -1,15 +1,15 @@
-10:13:55 Loading tags ...
-10:13:55 Tags in IP: 9953
-10:13:55 Tags in control: 9569
-10:13:55 Fragment size was set manually to 50 bp
-10:13:55 Peak size is 101 bp
-10:13:55 Estimating tag distribution using gaussian ...
-10:13:55 Finding peaks in ChIP sample ...
-10:13:55 Finding peaks in control sample ...
-10:13:55 Calculating peak scores ...
-10:13:55 Calculating FDR ...
-10:13:55 1 peaks detected
-10:13:55 Enrichment cutoff: 2.0
-10:13:55 Score cutoff: 1.0
-10:13:55 Writing input peaks to negative_peaks.tsv
-10:13:55 Done!
+11:01:24 Loading tags ...
+11:01:24 Tags in IP: 9953
+11:01:24 Tags in control: 9569
+11:01:24 Fragment size was set manually to 50 bp
+11:01:24 Peak size is 101 bp
+11:01:24 Estimating tag distribution using gaussian ...
+11:01:24 Finding peaks in ChIP sample ...
+11:01:24 Finding peaks in control sample ...
+11:01:24 Calculating peak scores ...
+11:01:24 Calculating FDR ...
+11:01:24 1 peaks detected
+11:01:24 Enrichment cutoff: 2.0
+11:01:24 Score cutoff: 1.0
+11:01:24 Writing input peaks to negative_peaks.tsv
+11:01:24 Done!
diff --git a/tools/peakzilla/test-data/results_1.tsv b/tools/peakzilla/test-data/results_1.tsv
@@ -0,0 +1,3 @@
+#Chromosome	Start	End	Name	Summit	Score	ChIP	Control	FoldEnrichment	DistributionScore	FDR
+2R	18296016	18296218	Peak_1	18296117	677.90	1729.79	163.82	10.56	0.43	0.00
+2R	19461248	19461450	Peak_2	19461349	2.54	1063.25	104.50	10.17	0.00	0.00
diff --git a/tools/peakzilla/test-data/results_2.tsv b/tools/peakzilla/test-data/results_2.tsv

Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,3 @@`
	`1`	`+#Chromosome Start End Name Summit Score ChIP Control FoldEnrichment DistributionScore FDR`
	`2`	`+2R 18296016 18296218 Peak_1 18296117 677.90 1729.79 163.82 10.56 0.43 0.00`
	`3`	`+2R 19461248 19461450 Peak_2 19461349 2.54 1063.25 104.50 10.17 0.00 0.00`