From 1a2357ebc2eb23ce5c1a74de78a8509198ad2f0d Mon Sep 17 00:00:00 2001
From: RZ9082 <randzoabi.rz@gmail.com>
Date: Wed, 13 Mar 2024 14:34:01 +0100
Subject: [PATCH 1/2] Add bio.tools ref to crisprstudio

---
 tools/crispr_studio/crispr_studio.xml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/tools/crispr_studio/crispr_studio.xml b/tools/crispr_studio/crispr_studio.xml
index ef3f933e05c..d1c6ac40af8 100644
--- a/tools/crispr_studio/crispr_studio.xml
+++ b/tools/crispr_studio/crispr_studio.xml
@@ -3,6 +3,9 @@
     <description>
         facilitate and accelerate CRISPR array visualization from a GFF3 file generated with CRISPRDetect
     </description>
+    <xrefs>
+        <xref type="bio.tools">crisprstudio</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="1">crispr_studio</requirement>
     </requirements>

From cb24109f6b4c8067719224bd8a5d259ae464b0d9 Mon Sep 17 00:00:00 2001
From: RZ9082 <randzoabi.rz@gmail.com>
Date: Wed, 13 Mar 2024 14:51:36 +0100
Subject: [PATCH 2/2] Fix lint WARNING

---
 tools/crispr_studio/crispr_studio.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/crispr_studio/crispr_studio.xml b/tools/crispr_studio/crispr_studio.xml
index d1c6ac40af8..dff3481b3ef 100644
--- a/tools/crispr_studio/crispr_studio.xml
+++ b/tools/crispr_studio/crispr_studio.xml
@@ -54,7 +54,7 @@
                  <param name="isolate_list" type="data" format="txt" optional="true" label="List of Isolates to show" help="Generate the figure with the subset of isolates listed in the file"/>
             </when>
         </conditional>
-        <param name="n" argument="-n" truevalue="-n" falsevalue="" type="boolean" label="Show the size of the spacers over the boxed diamonds?" help="We recommend to use this option only for experimental analysis of the data"/>
+        <param argument="-n" truevalue="-n" falsevalue="" type="boolean" label="Show the size of the spacers over the boxed diamonds?" help="We recommend to use this option only for experimental analysis of the data"/>
         <param argument="-f" truevalue="-f" falsevalue="" type="boolean" label="Skip the verification of the fasta file generated from the GFF file?" help="The verification is mainly based on the length of the spacer sequences. If a spacer is 1.5 time shorter or longer than the average spacer size of the dataset, a warning is raised and the script stops (Verification is ran by default)."/>
         <param name="cut_off" type="integer" optional="true" label="Score cutoff for pairing of the spacers"/>
         <param argument="-gU" truevalue="-gU" falsevalue="" type="boolean" label="Gray out unique?" help="The unique spacers will be grayed"/>