From 22e3bc5d61cdfec9938d42062d0f03766768c93f Mon Sep 17 00:00:00 2001
From: Deepti Varshney <44775741+Deeptivarshney@users.noreply.github.com>
Date: Mon, 17 Jun 2024 14:32:14 +0200
Subject: [PATCH] accept fastq.gz (#6093)

---
 tools/falco/falco.xml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/tools/falco/falco.xml b/tools/falco/falco.xml
index 15d2dc03961..5d5e05a8a36 100644
--- a/tools/falco/falco.xml
+++ b/tools/falco/falco.xml
@@ -22,6 +22,8 @@
             #set format = 'bam'
         #elif 'sam' in $input_file.ext:
             #set format = 'sam'
+        #elif 'gz' in $input_file.ext:
+            #set format = 'fastq.gz'
         #else
             #set format = 'fastq'
         #end if