Updated Minimap2 tool, debugged linting errors (#5889) #135

Job	Run time
Setup cache and determine changed repositories (3.11)	5m 43s
Lint R scripts (ubuntu-20.04, release)	1m 45s
Lint tool-list (3.11)	2m 30s
Check file sizes	0s
Lint Python scripts	0s
Test tools (0, 3.11)	23m 48s
Test tools (1, 3.11)	29m 44s
Test tools (2, 3.11)	33m 36s
Test tools (3, 3.11)	49m 31s
Combine chunked test results (3.11)	44s
Check workflow success	0s
Deploy	0s
Report deploy status	0s
	2h 27m 21s

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