Merge branch 'jmm/move-to-impl' into jmm/global-boundaries-2

Author: jonahm-LANL

example/advection/parthenon_app_inputs.cpp

@@ -11,6 +11,9 @@
 // the public, perform publicly and display publicly, and to permit others to do so.
 //========================================================================================
 
+#include <algorithm>
+#include <cstdio>
+#include <memory>
 #include <sstream>
 #include <string>
 

example/calculate_pi/pi_driver.cpp

@@ -13,6 +13,7 @@
 
 // Standard Includes
 #include <fstream>
+#include <iostream>
 #include <memory>
 #include <string>
 #include <vector>

example/fine_advection/parthenon_app_inputs.cpp

@@ -11,6 +11,7 @@
 // the public, perform publicly and display publicly, and to permit others to do so.
 //========================================================================================
 
+#include <memory>
 #include <sstream>
 #include <string>
 

example/kokkos_pi/kokkos_pi.cpp

@@ -47,7 +47,7 @@
 // and using flat range and MDRange in Kokkos
 //
 
-#include <stdio.h>
+#include <cstdio>
 
 #include <iostream>
 #include <memory>

example/poisson/parthenon_app_inputs.cpp

@@ -13,6 +13,7 @@
 
 #include <sstream>
 #include <string>
+#include <vector>
 
 #include <parthenon/package.hpp>
 

example/poisson/poisson_driver.cpp

@@ -12,6 +12,7 @@
 //========================================================================================
 
 #include <algorithm>
+#include <iostream>
 #include <memory>
 #include <string>
 #include <vector>

example/poisson/poisson_package.cpp

@@ -13,6 +13,7 @@
 
 #include <algorithm>
 #include <cmath>
+#include <iostream>
 #include <limits>
 #include <memory>
 #include <string>

example/poisson_gmg/poisson_driver.cpp

@@ -12,6 +12,7 @@
 //========================================================================================
 
 #include <algorithm>
+#include <cstdio>
 #include <memory>
 #include <string>
 #include <vector>

example/poisson_gmg/poisson_package.cpp

@@ -16,6 +16,7 @@
 #include <limits>
 #include <memory>
 #include <string>
+#include <utility>
 #include <vector>
 
 #include <bvals/boundary_conditions_generic.hpp>

example/sparse_advection/parthenon_app_inputs.cpp

@@ -10,9 +10,13 @@
 // the public, perform publicly and display publicly, and to permit others to do so.
 //========================================================================================
 
+#include <algorithm>
+#include <cstdio>
 #include <limits>
+#include <memory>
 #include <sstream>
 #include <string>
+#include <vector>
 
 #include <parthenon/package.hpp>
 
@@ -141,7 +145,7 @@ void PostStepDiagnosticsInLoop(Mesh *mesh, ParameterInput *pin, const SimTime &t
   }
 
 #ifdef MPI_PARALLEL
-  static_assert(sizeof(std::uint64_t) == sizeof(unsigned long long int),
+  static_assert(sizeof(std::uint64_t) == sizeof(unsigned long long int), // NOLINT
                 "MPI_UNSIGNED_LONG_LONG same as uint64_t");
   if (Globals::my_rank == 0) {
     PARTHENON_MPI_CHECK(MPI_Reduce(MPI_IN_PLACE, num_allocated.data(), n, MPI_INT,

example/stochastic_subgrid/parthenon_app_inputs.cpp

@@ -11,6 +11,9 @@
 // the public, perform publicly and display publicly, and to permit others to do so.
 //========================================================================================
 
+#include <algorithm>
+#include <cstdio>
+#include <memory>
 #include <sstream>
 #include <string>
 

src/amr_criteria/amr_criteria.cpp

@@ -12,7 +12,9 @@
 //========================================================================================
 #include "amr_criteria/amr_criteria.hpp"
 
+#include <iostream>
 #include <memory>
+#include <string>
 
 #include "amr_criteria/refinement_package.hpp"
 #include "interface/meshblock_data.hpp"

src/amr_criteria/refinement_package.cpp

@@ -16,6 +16,7 @@
 #include <algorithm>
 #include <exception>
 #include <memory>
+#include <string>
 #include <utility>
 
 #include "amr_criteria/amr_criteria.hpp"

src/argument_parser.hpp

@@ -14,6 +14,7 @@
 #ifndef ARGUMENT_PARSER_HPP_
 #define ARGUMENT_PARSER_HPP_
 
+#include <cstdio>
 #include <iostream>
 #include <string>
 

src/bvals/bvals.cpp

@@ -25,6 +25,7 @@
 #include <iostream>
 #include <iterator>
 #include <limits>
+#include <memory>
 #include <sstream>
 #include <stdexcept>
 #include <string>

src/bvals/comms/bnd_info.cpp

@@ -16,6 +16,7 @@
 //========================================================================================
 
 #include <algorithm>
+#include <cstdio>
 #include <iostream> // debug
 #include <memory>
 #include <string>

src/bvals/comms/build_boundary_buffers.cpp

@@ -22,6 +22,7 @@
 #include <random>
 #include <string>
 #include <unordered_map>
+#include <utility>
 #include <vector>
 
 #include "bvals_in_one.hpp"

src/bvals/comms/tag_map.cpp

@@ -15,9 +15,11 @@
 // the public, perform publicly and display publicly, and to permit others to do so.
 //========================================================================================
 
-#include "tag_map.hpp"
+#include <memory>
+
 #include "bnd_info.hpp"
 #include "bvals_utils.hpp"
+#include "tag_map.hpp"
 #include "utils/loop_utils.hpp"
 
 namespace parthenon {

src/bvals/neighbor_block.cpp

@@ -28,6 +28,7 @@
 #include <stdexcept> // runtime_error
 #include <string>    // c_str()
 #include <unordered_set>
+#include <vector>
 
 #include "globals.hpp"
 #include "mesh/forest/logical_location.hpp"

src/driver/driver.cpp

@@ -15,7 +15,10 @@
 #include <chrono>
 #include <fstream>
 #include <iomanip>
+#include <iostream>
 #include <limits>
+#include <string>
+#include <vector>
 
 #include "driver/driver.hpp"
 

src/interface/data_collection.cpp

@@ -11,6 +11,7 @@
 // the public, perform publicly and display publicly, and to permit others to do so.
 //========================================================================================
 
+#include <memory>
 #include <string>
 
 #include "interface/data_collection.hpp"

src/interface/meshblock_data.cpp

@@ -15,9 +15,11 @@
 
 #include <algorithm>
 #include <cstdlib>
+#include <iostream>
 #include <memory>
 #include <set>
 #include <sstream>
+#include <string>
 #include <unordered_set>
 #include <utility>
 #include <vector>

src/interface/metadata.cpp

@@ -13,8 +13,11 @@
 
 #include "interface/metadata.hpp"
 
+#include <algorithm>
 #include <exception>
 #include <iostream>
+#include <memory>
+#include <set>
 #include <sstream>
 #include <string>
 #include <unordered_map>

src/interface/sparse_pool.cpp

@@ -12,6 +12,8 @@
 //========================================================================================
 
 #include <memory>
+#include <string>
+#include <vector>
 
 #include "interface/sparse_pool.hpp"
 

src/interface/state_descriptor.cpp

@@ -13,11 +13,13 @@
 
 #include <iomanip>
 #include <iostream>
+#include <memory>
 #include <numeric>
 #include <sstream>
 #include <string>
 #include <unordered_map>
 #include <unordered_set>
+#include <utility>
 #include <vector>
 
 #include "basic_types.hpp"

src/interface/swarm.cpp

@@ -14,6 +14,7 @@
 #include <cstdlib>
 #include <limits>
 #include <memory>
+#include <string>
 #include <utility>
 #include <vector>
 

src/interface/swarm_container.cpp

@@ -11,7 +11,9 @@
 // the public, perform publicly and display publicly, and to permit others to do so.
 //========================================================================================
 #include <cstdlib>
+#include <iostream>
 #include <memory>
+#include <string>
 #include <utility>
 #include <vector>
 

src/interface/swarm_device_context.hpp

@@ -13,6 +13,8 @@
 #ifndef INTERFACE_SWARM_DEVICE_CONTEXT_HPP_
 #define INTERFACE_SWARM_DEVICE_CONTEXT_HPP_
 
+#include <cstdio>
+
 #include "coordinates/coordinates.hpp"
 #include "utils/utils.hpp"
 

src/interface/update.cpp

@@ -14,6 +14,7 @@
 #include "interface/update.hpp"
 
 #include <memory>
+#include <vector>
 
 #include "config.hpp"
 #include "coordinates/coordinates.hpp"

src/interface/variable.cpp

@@ -13,8 +13,10 @@
 
 #include "interface/variable.hpp"
 
+#include <cstdio>
 #include <iostream>
 #include <memory>
+#include <string>
 #include <tuple>
 #include <utility>
 

src/interface/variable_pack.hpp

@@ -16,6 +16,7 @@
 #include <algorithm>
 #include <array>
 #include <cstddef>
+#include <cstdio>
 #include <forward_list>
 #include <map>
 #include <memory>

src/mesh/mesh-amr_loadbalance.cpp

@@ -29,6 +29,8 @@
 #include <string>
 #include <tuple>
 #include <unordered_set>
+#include <utility>
+#include <vector>
 
 #include "parthenon_mpi.hpp"
 

src/mesh/mesh-gmg.cpp

@@ -20,11 +20,13 @@
 #include <algorithm>
 #include <cstdint>
 #include <iostream>
+#include <limits>
 #include <numeric>
 #include <sstream>
 #include <string>
 #include <tuple>
 #include <unordered_set>
+#include <vector>
 
 #include "parthenon_mpi.hpp"
 

src/outputs/histogram.cpp

@@ -35,6 +35,7 @@
 #include <cstdlib>
 #include <iomanip>
 #include <iostream>
+#include <limits>
 #include <sstream>
 #include <stdexcept>
 #include <string>

src/outputs/history.cpp

@@ -23,6 +23,7 @@
 #include <iomanip>
 #include <iostream>
 #include <limits>
+#include <map>
 #include <memory>
 #include <sstream>
 #include <stdexcept>