pip installation fails with this ERROR: Could not install packages due to an OSError: [Errno 30] Read-only file system: '/opt/python/3.9.14/lib/python3.9/site-packages/texttable.py'

[bioarpit1]

Collecting scarf
Downloading scarf-0.26.3-py3-none-any.whl (200 kB)
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Collecting hnswlib
Downloading hnswlib-0.7.0.tar.gz (33 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: importlib-metadata in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (6.5.0)
Collecting scikit-network
Downloading scikit_network-0.30.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.2 MB)
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Collecting scikit-learn
Using cached scikit_learn-1.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.6 MB)
Collecting umap-learn
Using cached umap-learn-0.5.3.tar.gz (88 kB)
Preparing metadata (setup.py) ... done
Collecting dask>=2021.8.1
Downloading dask-2023.4.1-py3-none-any.whl (1.2 MB)
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Collecting ipython-autotime
Downloading ipython_autotime-0.3.1-py2.py3-none-any.whl (6.8 kB)
Collecting pybind11
Using cached pybind11-2.10.4-py3-none-any.whl (222 kB)
Collecting gensim
Downloading gensim-4.3.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (26.5 MB)
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Collecting loguru
Downloading loguru-0.7.0-py3-none-any.whl (59 kB)
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Collecting pandas
Downloading pandas-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB)
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Collecting numba
Using cached numba-0.56.4-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.5 MB)
Collecting leidenalg
Downloading leidenalg-0.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB)
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Requirement already satisfied: ipywidgets in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (8.0.6)
Collecting numpy
Using cached numpy-1.24.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
Collecting datashader
Downloading datashader-0.14.4-py2.py3-none-any.whl (18.2 MB)
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Collecting numcodecs
Downloading numcodecs-0.11.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.7 MB)
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Collecting joblib
Using cached joblib-1.2.0-py3-none-any.whl (297 kB)
Collecting tqdm
Using cached tqdm-4.65.0-py3-none-any.whl (77 kB)
Collecting h5py>=3.3.0
Using cached h5py-3.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.7 MB)
Collecting networkx
Using cached networkx-3.1-py3-none-any.whl (2.1 MB)
Requirement already satisfied: setuptools in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (67.6.1)
Collecting seaborn
Using cached seaborn-0.12.2-py3-none-any.whl (293 kB)
Collecting statsmodels
Using cached statsmodels-0.13.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.9 MB)
Collecting kneed
Downloading kneed-0.8.3-py3-none-any.whl (10 kB)
Requirement already satisfied: requests in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (2.28.2)
Collecting matplotlib
Using cached matplotlib-3.7.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB)
Collecting cmocean
Downloading cmocean-3.0.3-py3-none-any.whl (222 kB)
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Collecting scipy
Using cached scipy-1.10.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.5 MB)
Collecting zarr
Downloading zarr-2.14.2-py3-none-any.whl (203 kB)
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Collecting threadpoolctl
Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB)
Requirement already satisfied: packaging in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (23.1)
Requirement already satisfied: click>=8.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from dask>=2021.8.1->scarf) (8.1.3)
Requirement already satisfied: pyyaml>=5.3.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from dask>=2021.8.1->scarf) (6.0)
Collecting fsspec>=2021.09.0
Downloading fsspec-2023.4.0-py3-none-any.whl (153 kB)
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Collecting partd>=1.2.0
Downloading partd-1.4.0-py3-none-any.whl (18 kB)
Collecting toolz>=0.10.0
Downloading toolz-0.12.0-py3-none-any.whl (55 kB)
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Collecting cloudpickle>=1.5.0
Downloading cloudpickle-2.2.1-py3-none-any.whl (25 kB)
Requirement already satisfied: zipp>=0.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from importlib-metadata->scarf) (3.15.0)
Requirement already satisfied: python-dateutil>=2.8.2 in /opt/python/3.9.14/lib/python3.9/site-packages (from pandas->scarf) (2.8.2)
Collecting pytz>=2020.1
Using cached pytz-2023.3-py2.py3-none-any.whl (502 kB)
Collecting tzdata>=2022.1
Using cached tzdata-2023.3-py2.py3-none-any.whl (341 kB)
Collecting xarray
Downloading xarray-2023.4.2-py3-none-any.whl (979 kB)
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Collecting colorcet
Downloading colorcet-3.0.1-py2.py3-none-any.whl (1.7 MB)
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Collecting pillow
Using cached Pillow-9.5.0-cp39-cp39-manylinux_2_28_x86_64.whl (3.4 MB)
Collecting pyct
Downloading pyct-0.5.0-py2.py3-none-any.whl (15 kB)
Collecting datashape
Downloading datashape-0.5.2.tar.gz (76 kB)
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Preparing metadata (setup.py) ... done
Collecting param
Downloading param-1.13.0-py2.py3-none-any.whl (87 kB)
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Collecting numpy
Using cached numpy-1.23.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.1 MB)
Collecting llvmlite<0.40,>=0.39.0dev0
Using cached llvmlite-0.39.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.6 MB)
Collecting smart-open>=1.8.1
Downloading smart_open-6.3.0-py3-none-any.whl (56 kB)
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Requirement already satisfied: ipython in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython-autotime->scarf) (8.12.0)
Requirement already satisfied: traitlets>=4.3.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipywidgets->scarf) (5.9.0)
Requirement already satisfied: ipykernel>=4.5.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipywidgets->scarf) (6.22.0)
Requirement already satisfied: jupyterlab-widgets~=3.0.7 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipywidgets->scarf) (3.0.7)
Requirement already satisfied: widgetsnbextension~=4.0.7 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipywidgets->scarf) (4.0.7)
Collecting igraph<0.11,>=0.10.0
Downloading igraph-0.10.4-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.3 MB)
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Collecting fonttools>=4.22.0
Using cached fonttools-4.39.3-py3-none-any.whl (1.0 MB)
Collecting importlib-resources>=3.2.0
Using cached importlib_resources-5.12.0-py3-none-any.whl (36 kB)
Collecting contourpy>=1.0.1
Using cached contourpy-1.0.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (299 kB)
Collecting kiwisolver>=1.0.1
Using cached kiwisolver-1.4.4-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB)
Collecting pyparsing>=2.3.1
Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB)
Collecting cycler>=0.10
Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting entrypoints
Downloading entrypoints-0.4-py3-none-any.whl (5.3 kB)
Requirement already satisfied: idna<4,>=2.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from requests->scarf) (3.4)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from requests->scarf) (1.26.15)
Requirement already satisfied: charset-normalizer<4,>=2 in /opt/python/3.9.14/lib/python3.9/site-packages (from requests->scarf) (3.1.0)
Requirement already satisfied: certifi>=2017.4.17 in /opt/python/3.9.14/lib/python3.9/site-packages (from requests->scarf) (2022.12.7)
Collecting patsy>=0.5.2
Using cached patsy-0.5.3-py2.py3-none-any.whl (233 kB)
Collecting pynndescent>=0.5
Using cached pynndescent-0.5.10.tar.gz (1.1 MB)
Preparing metadata (setup.py) ... done
Collecting fasteners
Downloading fasteners-0.18-py3-none-any.whl (18 kB)
Collecting asciitree
Downloading asciitree-0.3.3.tar.gz (4.0 kB)
Preparing metadata (setup.py) ... done
Collecting texttable>=1.6.2
Downloading texttable-1.6.7-py2.py3-none-any.whl (10 kB)
Requirement already satisfied: debugpy>=1.6.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (1.6.7)
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Requirement already satisfied: nest-asyncio in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (1.5.6)
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Requirement already satisfied: matplotlib-inline>=0.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (0.1.6)
Requirement already satisfied: pyzmq>=20 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (25.0.2)
Requirement already satisfied: tornado>=6.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (6.3)
Requirement already satisfied: comm>=0.1.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (0.1.3)
Requirement already satisfied: psutil in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (5.9.5)
Requirement already satisfied: pickleshare in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (0.7.5)
Requirement already satisfied: prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (3.0.38)
Requirement already satisfied: stack-data in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (0.6.2)
Requirement already satisfied: jedi>=0.16 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (0.18.2)
Requirement already satisfied: decorator in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (5.1.1)
Requirement already satisfied: backcall in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (0.2.0)
Requirement already satisfied: pygments>=2.4.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (2.15.1)
Requirement already satisfied: pexpect>4.3 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (4.8.0)
Requirement already satisfied: typing-extensions in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (4.5.0)
Collecting locket
Downloading locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
Requirement already satisfied: six in /opt/python/3.9.14/lib/python3.9/site-packages (from patsy>=0.5.2->statsmodels->scarf) (1.16.0)
Collecting multipledispatch>=0.4.7
Downloading multipledispatch-0.6.0-py3-none-any.whl (11 kB)
Requirement already satisfied: parso<0.9.0,>=0.8.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from jedi>=0.16->ipython->ipython-autotime->scarf) (0.8.3)
Requirement already satisfied: platformdirs>=2.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from jupyter-core!=5.0.,>=4.12->ipykernel>=4.5.1->ipywidgets->scarf) (3.2.0)
Requirement already satisfied: ptyprocess>=0.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from pexpect>4.3->ipython->ipython-autotime->scarf) (0.7.0)
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Requirement already satisfied: executing>=1.2.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from stack-data->ipython->ipython-autotime->scarf) (1.2.0)
Requirement already satisfied: asttokens>=2.1.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from stack-data->ipython->ipython-autotime->scarf) (2.2.1)
Requirement already satisfied: pure-eval in /opt/python/3.9.14/lib/python3.9/site-packages (from stack-data->ipython->ipython-autotime->scarf) (0.2.2)
Using legacy 'setup.py install' for umap-learn, since package 'wheel' is not installed.
Using legacy 'setup.py install' for pynndescent, since package 'wheel' is not installed.
Using legacy 'setup.py install' for asciitree, since package 'wheel' is not installed.
Using legacy 'setup.py install' for datashape, since package 'wheel' is not installed.
Building wheels for collected packages: hnswlib
Building wheel for hnswlib (pyproject.toml) ... done
Created wheel for hnswlib: filename=hnswlib-0.7.0-cp39-cp39-linux_x86_64.whl size=2157307 sha256=cbeeabf81c4880186a8985acb0844ce35ee916ddcaea5eec2846c68754f62c85
Stored in directory: /nfs/amishra/.cache/pip/wheels/ba/26/61/fface6c407f56418b3140cd7645917f20ba6b27d4e32b2bd20
Successfully built hnswlib
Installing collected packages: texttable, pytz, asciitree, tzdata, tqdm, toolz, threadpoolctl, smart-open, pyparsing, pybind11, pillow, param, numpy, networkx, multipledispatch, loguru, locket, llvmlite, kiwisolver, joblib, importlib-resources, igraph, fsspec, fonttools, fasteners, entrypoints, cycler, cloudpickle, scipy, pyct, patsy, partd, pandas, numcodecs, numba, leidenalg, hnswlib, h5py, datashape, contourpy, zarr, xarray, statsmodels, scikit-network, scikit-learn, matplotlib, kneed, gensim, dask, colorcet, seaborn, pynndescent, ipython-autotime, datashader, cmocean, umap-learn, scarf
ERROR: Could not install packages due to an OSError: [Errno 30] Read-only file system: '/opt/python/3.9.14/lib/python3.9/site-packages/texttable.py'

WARNING: You are using pip version 22.0.4; however, version 23.1 is available.
You should consider upgrading via the '/opt/python/3.9.14/bin/python3.9 -m pip install --upgrade pip' command.
Note: you may need to restart the kernel to use updated packages.
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