"Marker protein search failed!" error after execution #46
Description
Describe the bug
Hi, I am using platon version 1.7 installed through mamba. As input I am using draft assmblies obtained from bacterial whole genome sequencing (enterobacteria, mainly klebsiella) with Illumina. My issues are:
- What is the required length of the contigs? One of the assemblies has 170 contigs; however, 56 are analyzed based on their size.
- Using any of the assemblies, the result is always "Marker protein search failed!" The error that appears in the log file is: ERROR - MAIN - diamond execution failed! diamond-error-code=-11.
Any hint on how to fix it?
Best regards.
Therefore, please provide us with at least the following information:
- what exactly happened
"Marker protein search failed!" error after execution
- what exact command was executed: just copy-paste the command line
platon --db ../Data_Bases/db_platon/ --prefix --output platon/ --verbose --threads 8 contigs/KP882418.fasta
- what installation of Platon did you use:
BioConda,GitHub,Pip
BioConda (mamba)
- which version of Platon was used
1.7