Tripal

All

45 repositories

tripal
Public
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
cms-extension drupal hacktoberfest chado tripal biological-data tripal-core
PHP
•
GNU General Public License v2.0
•49•67•127•5•Updated Nov 12, 2024Nov 12, 2024
tripal_analysis_expression
Public
Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 3, and Chado 1.3.
analysis gene-expression loader chado tripal
PHP
•
GNU General Public License v2.0
•11•4•18•0•Updated Oct 18, 2024Oct 18, 2024
tripal_doc
Public
Official Documentation for the Tripal Platform
hacktoberfest documentation-site tripal tripal4 tripal-core
Dockerfile
•
GNU General Public License v3.0
•3•2•28•1•Updated Oct 15, 2024Oct 15, 2024
tripal_blast
Public
Provides an user interface to BLAST on Tripal sites.
integration hacktoberfest ncbi-blast tripal
PHP
•13•5•14•0•Updated Oct 8, 2024Oct 8, 2024
api
Public
Provides docs for the core Tripal API
Dockerfile
•
GNU General Public License v3.0
•0•0•0•0•Updated Oct 6, 2024Oct 6, 2024
test-tripal-action
Public
Provides a Github Action to make automated testing workflows for Tripal Extension modules easy!
GNU General Public License v2.0
•0•0•0•0•Updated Aug 20, 2024Aug 20, 2024
Tripal-JBrowse-InternetAccountPlugin
Public
Provides a JBrowse plugin that uses the Drupal 8+ REST API to confirm a Drupal user is logged in.
TypeScript
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Apache License 2.0
•0•0•0•0•Updated Jul 24, 2024Jul 24, 2024
trpfancy_fields
Public
Provide additional fields to jazz up your Tripal Content Pages!
tripal
PHP
•2•1•4•1•Updated Jun 27, 2024Jun 27, 2024
tripald3
Public
provides an API for developing consistent biological diagrams with a common configuration, as well as, providing some common diagrams such as pie, bar, column and pedigree diagrams.
visualization api d3js tripal3-compatible tripal
JavaScript
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GNU General Public License v2.0
•4•3•3•2•Updated Jun 27, 2024Jun 27, 2024
tripal_design
Public
Design Documentation for Tripal in markdown
GNU General Public License v2.0
•0•0•0•0•Updated May 31, 2024May 31, 2024
tripal_jbrowse
Public
Drupal/Tripal: Drupal integration for GMOD JBrowse instances.
visualization integration genome jbrowse hacktoberfest tripal
PHP
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GNU General Public License v3.0
•4•9•9•0•Updated Apr 20, 2024Apr 20, 2024
tripal_devtools
Public
Provides tools to make development of Tripal extension modules easier!
PHP
•
GNU General Public License v2.0
•0•0•2•0•Updated Mar 4, 2024Mar 4, 2024
brapi
Public
Breeding API client-server implementation (v1 & v2) for Tripal
PHP
•3•0•4•1•Updated Oct 25, 2023Oct 25, 2023
tripal_sequence_similarity_search
Public
This module supports sequence similarity search on a Tripal website through a new dual application option. The Tripal module provides access to the speed increase available through Diamond for BLASTP/BLASTX style searches as well as traditional NCBI BLAST for BLASTN. Both applications are integrated into a single interface that provides file upl…
PHP
•
Other
•1•2•11•0•Updated Sep 19, 2023Sep 19, 2023
chado_linker_fields
Public
Tripal fields to display content linked to a different content type through linker tables
PHP
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GNU General Public License v2.0
•0•0•1•0•Updated Aug 30, 2023Aug 30, 2023
trpdownload_api
Public
An API for implementing download functionality.
api export tripal
PHP
•4•2•2•0•Updated Jun 3, 2023Jun 3, 2023
TripalTestSuite
Public
Handle drupal bootstrapping, load environment variables, and easily wrap your tests in DB transactions.
drupal unittest tripal tripal3 database-seeder tripal-developer-tools
PHP
•
GNU Lesser General Public License v3.0
•1•3•8•0•Updated Apr 27, 2023Apr 27, 2023
private_biodata
Public
Make individual pages private while others of the same Tripal Content Type remain public!
access-control tripal3 tripal
PHP
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GNU General Public License v2.0
•0•1•1•0•Updated Apr 21, 2023Apr 21, 2023
tripal_galaxy
Public
This module is for integration of Tripal and a remote Galaxy Instance.
integration galaxy-project tripal
PHP
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GNU General Public License v2.0
•4•2•13•2•Updated Apr 19, 2023Apr 19, 2023
tripal_file
Public
Manages site-wide files and associates them with content in a Tripal site.
PHP
•2•1•7•0•Updated Mar 27, 2023Mar 27, 2023
tripal_elasticsearch
Public
search elasticsearch integration tripal chado
PHP
•
GNU General Public License v3.0
•8•5•14•4•Updated Feb 27, 2023Feb 27, 2023
t4d8
Public
This is a temporary repository for Drupal 9 upgrade for Tripal v4. It is meant to house issues related to the upgrade.
hacktoberfest drupal9 tripal4 tripal
PLpgSQL
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GNU General Public License v2.0
•10•1•2•0•Updated Feb 22, 2023Feb 22, 2023
tripal_analysis_blast
Public
This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.
integration hacktoberfest ncbi-blast tripal
PHP
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GNU General Public License v3.0
•6•2•6•1•Updated Dec 15, 2022Dec 15, 2022
tripal_genetic
Public
Extends core Tripal with support focused on genotypic data, genetic markers, sequence variants, etc.
chado biological-data tripal4 genetic-variation tripal-core
GNU General Public License v2.0
•0•1•1•0•Updated Nov 17, 2022Nov 17, 2022
setup-tripal-action
Public
Provides a GitHub Action to setup a basic Tripal site in your GitHub Action Workflows.
GNU General Public License v3.0
•2•0•0•0•Updated Oct 18, 2022Oct 18, 2022
tripal_analysis_interpro
Public
This module extends the Tripal Analysis Module and provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.
analysis loader tripal interproscan-xml
PHP
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GNU General Public License v3.0
•5•1•2•0•Updated Jul 26, 2022Jul 26, 2022
tripal_network
Public
Provides Tripal integration of biological networks including storage, loaders and visualzations
visualization loader tripal biological-networks
PHP
•0•1•0•0•Updated Mar 15, 2022Mar 15, 2022
tripal_install
Public
Tripal Install Profiles
PHP
•9•3•4•1•Updated Feb 1, 2021Feb 1, 2021
tripal_remote_job
Public
A Tripal module, Tripal Remote Job can be used to launch jobs on external/remote servers to avoid overloading the webserver.
tripal
PHP
•0•3•1•0•Updated Jan 19, 2021Jan 19, 2021
fields_generator
Public
A composer tool for easily generating Tripal Fields
composer tripal tripal3 tripal-developer-tools
PHP
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GNU General Public License v3.0
•1•1•7•0•Updated Aug 10, 2020Aug 10, 2020