Repositories list

• earnest_ad_biomarker_modeling

  Public
  Tom's project using assessing various ATN staging approaches for predicting cognition in AD.

  Python

  •0•1•0•0•Updated Dec 9, 2024Dec 9, 2024

• yang_combat_amyloid_pet

  Public
  Public code for Yang et al. 2024 (Human Brain Mapping)

  R

  •0•1•0•0•Updated Nov 15, 2024Nov 15, 2024

• AmyloidPETNet

  Public
  Python

  •

  MIT License

  •2•7•0•0•Updated Nov 14, 2024Nov 14, 2024

• earnest_nmf_tau_staging

  Public
  Public code for Earnest et al. 2024 (Alzheimer's & Dementia)

  R

  •1•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• dsopNMF

  Public
  Accompanying code to IPMI 2023 Scalable Orthonormal Projective NMF via Diversified Stochastic Optimization: https://doi.org/10.1007/978-3-031-34048-2_38

  Python

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• qr_svd_opNMF

  Public
  Accompanying code for Scalable NMF via linearly optimized data compression at https://doi.org/10.1117/12.2654282.

  Python

  •1•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• DynamicUNet

  Public
  Python

  •0•2•1•0•Updated Nov 2, 2024Nov 2, 2024

• SC-VAE

  Public
  This is the official repository for the paper "SC-VAE: Sparse Coding-based Variational Autoencoder with Learned ISTA"

  Python

  •1•2•0•0•Updated Sep 4, 2024Sep 4, 2024

• ISBI_MoPoE

  Public
  This the repo for the paper titled "Improving Normative Modeling for Multi-modal Neuroimaging Data using mixture-of-product-of-experts variational autoencoders" published in IEEE ISBI 2024

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Jul 26, 2024Jul 26, 2024

• SPIE_mmVAE

  Public
  This the repo for the paper titled "Normative modeling using multimodal variational autoencoders to identify abnormal brain volume deviations in Alzheimer's disease" published in SPIE Medical Imaging 2023

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

• AgileFormer

  Public
  This the repo for the paper tiltled "AgileFormer: Spatially Agile Transformer UNet for Medical Image Segmentation"

  transformersimage-segmentationsemantic-segmentation+ 2medical-image-segmentationunet-segmentation

  Python

  •

  Apache License 2.0

  •9•65•5•0•Updated Jul 12, 2024Jul 12, 2024

• SC-MIL

  Public
  This repo for the paper titled "SC-MIL: Sparsely Coded Multiple Instance Learning for Whole Slide Image Classification"

  sparse-codinghistologyweakly-supervised-learning+ 4tumor-detectionwholeslide-imagingmultiple-instance-learninghistological-slides

  Python

  •0•9•1•0•Updated Apr 25, 2024Apr 25, 2024

• DLK

  Public
  Python

  •3•26•1•0•Updated Apr 9, 2024Apr 9, 2024

• sotiraslab.github.io

  Public
  Github repo for MINDS lab website

  TeX

  •

  MIT License

  •0•0•0•0•Updated Mar 5, 2024Mar 5, 2024

• QCResUNet

  Public
  This repo is used to document the paper titled "QCResUNet: Joint Subject-level and Voxel-level Prediction of Segmentation Quality"

  1•0•0•0•Updated Oct 24, 2023Oct 24, 2023

• MLNI

  Public
  Hydra clustering with correction been made. Code for paper: https://www.sciencedirect.com/science/article/pii/S1053811916001506

  Python

  •0•0•0•0•Updated Jun 26, 2023Jun 26, 2023

• glioma_molecular_3D

  Public
  Code for paper: https://doi.org/10.1093/noajnl/vdad023

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated May 11, 2023May 11, 2023

• NRG_AI_NeuroOnco_segment

  Public
  Code for paper: https://ascopubs.org/doi/abs/10.1200/CCI.22.00177

  Python

  •

  Other

  •0•0•0•0•Updated May 11, 2023May 11, 2023

• NRG_AI_NeuroOnco_preproc

  Public
  Code for paper: https://ascopubs.org/doi/abs/10.1200/CCI.22.00177

  Python

  •

  Other

  •0•0•0•0•Updated May 11, 2023May 11, 2023

• tumor_classification

  Public
  Code for paper: https://pubs.rsna.org/doi/pdf/10.1148/ryai.2021200301

  Python

  •0•0•0•0•Updated May 11, 2023May 11, 2023

• Plotly_Demo

  Public
  HTML

  •0•0•0•0•Updated Jan 13, 2023Jan 13, 2023

• RobertJirsaraie

  Public
  Repository for all my Computational Data Science PhD Projects

  R

  •0•0•0•0•Updated Oct 10, 2022Oct 10, 2022

• Func-BAG-GraphTheory_MGG

  Public
  R

  •0•0•0•0•Updated Aug 6, 2022Aug 6, 2022

• brainparts_FDG

  Public
  NMF Code for calculating components from Brain imaging data.

  MATLAB

  •

  Other

  •9•0•0•0•Updated Dec 26, 2021Dec 26, 2021

• Amyloid_Classifier_Deployed

  Public
  Python

  •1•0•0•0•Updated Oct 26, 2021Oct 26, 2021

• ConteCenterScripts

  Public
  Code used to manage, process, and analyze data for multiple longitudinal neuroimaging studies within the Conte Center at UC Irvine.

  Shell

  •2•0•0•0•Updated Sep 21, 2020Sep 21, 2020