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@solgenomics Breedbase and Solgenomics

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    164 repositories

    • sgn

      Public
      The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites
      perl
      PLpgSQL
      •
      MIT License
      •35•66•450•4•Updated Oct 30, 2024Oct 30, 2024

    • cea

      Public
      Cassava Expression Atlas
      1•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • cxgn-corelibs

      Public
      Various Modules relating to SGN
      perl
      Perl
      •14•10•3•2•Updated Oct 30, 2024Oct 30, 2024

    • breedbase_dockerfile

      Public
      The Dockerfiles for breeDBase
      Dockerfile
      •
      MIT License
      •8•8•2•0•Updated Oct 28, 2024Oct 28, 2024

    • gbsappui

      Public
      A user interface for GBSapp that can be integrated into Breedbase
      Perl
      •
      MIT License
      •0•0•7•0•Updated Oct 24, 2024Oct 24, 2024

    • coral.breedbase.org

      Public
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • breedbase_site

      Public template
      Minimum install for Breedbase
      PLpgSQL
      •
      MIT License
      •1•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • cassbase

      Public
      The mason components for the cassbase database, a variation of cassavabase for the CASS project
      Perl
      •
      MIT License
      •0•0•1•0•Updated Oct 8, 2024Oct 8, 2024

    • cassava

      Public
      Cassavabase - A website for Cassava research
      Perl
      •0•1•1•0•Updated Oct 3, 2024Oct 3, 2024

    • perl-local-lib

      Public
      Git repository for Perl local-lib for faster installs (eg. Dockerfiles)
      Perl
      •0•0•0•1•Updated Oct 2, 2024Oct 2, 2024

    • crispget

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • inventory.breedbase.org

      Public
      a breedbase instance for a crop agnostic inventory management system for BI OnRamp
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • post-composing-paper

      Public
      This is a repo to help build queries and tables for the post-composing paper
      R
      •2•0•0•1•Updated Sep 25, 2024Sep 25, 2024

    • musabase

      Public
      0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • test.cassbase.org

      Public
      the test site for CassBase
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • pawpaw.breedbase.org

      Public
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • sugarcane-training.breedbase.org

      Public
      the training site for sugarcane
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • solgenomics

      Public
      The mason components needed to run the solgenomics.net website
      MIT License
      •0•0•1•0•Updated Sep 10, 2024Sep 10, 2024

    • sugarcane

      Public
      PLpgSQL
      •
      MIT License
      •1•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • breedbase_compute_node

      Public
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • cassava-devel.sgn.cornell.edu

      Public
      0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • schemaspy

      Public
      contains output of schemaspy tool
      HTML
      •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • sugarcane-industry

      Public
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • erysimum

      Public
      Website for Erysimum genomes
      MIT License
      •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • nicotianabase

      Public
      Nicotiana base
      MIT License
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • R_libs

      Public
      Compiled R dependencies for Solgenomics & Breedbase databases, for faster install of docker etc.
      C++
      •
      MIT License
      •0•0•0•7•Updated Jul 11, 2024Jul 11, 2024

    • citrus

      Public
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

    • bio-chado-schema

      Public
      A standard DBIx::Class layer for the Chado database schema. Bootstrapped and updated using DBIx::Class::Schema::Loader.
      Perl
      •9•3•0•0•Updated Jun 13, 2024Jun 13, 2024

    • milkweed

      Public
      0•0•0•0•Updated May 3, 2024May 3, 2024

    • citrusgreening

      Public
      user interface for the citrusgreening site https://citrusgreening.org/
      0•0•34•0•Updated Apr 12, 2024Apr 12, 2024