Repositories list

• deepTools

  Public
  Tools to process and analyze deep sequencing data.

  bioinformaticsrna-seqgenomics+ 3ngschip-seqpython

  Python

  •

  Other

  •212•684•135•5•Updated Nov 21, 2024Nov 21, 2024

• py2bit

  Public
  A python library for accessing 2bit files

  bioinformaticstwobit

  C

  •

  MIT License

  •9•16•1•0•Updated Nov 18, 2024Nov 18, 2024

• HiCExplorer

  Public
  HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

  bioinformaticsgenomicsgalaxy+ 3hicchromosome-conformation-capturepython

  Python

  •

  GNU General Public License v3.0

  •70•233•128•0•Updated Oct 1, 2024Oct 1, 2024

• pyBigWig

  Public
  A python extension for quick access to bigWig and bigBed files

  bigwigbigbedbioinfomatics

  C

  •

  MIT License

  •49•218•12•1•Updated Jul 22, 2024Jul 22, 2024

• pyGenomeTracks

  Public
  python module to plot beautiful and highly customizable genome browser tracks

  Python

  •

  GNU General Public License v3.0

  •114•776•26•6•Updated Jul 10, 2024Jul 10, 2024

• HiCMatrix

  Public
  Python

  •

  GNU General Public License v3.0

  •8•11•0•0•Updated Apr 30, 2024Apr 30, 2024

• github-actions

  Public
  Play around with github actions

  JavaScript

  •

  MIT License

  •1•0•0•12•Updated Aug 16, 2023Aug 16, 2023

• Knight-Ruiz-Matrix-balancing-algorithm

  Public
  C++

  •5•10•5•1•Updated Apr 13, 2021Apr 13, 2021

• HiCBrowser

  Public
  Simple web browser to visualize HiC tracks

  visualizationdockerbioinformatics+ 5browsergenomicsepigeneticshi-chicexplorer

  JavaScript

  •

  GNU General Public License v2.0

  •5•18•6•2•Updated Dec 12, 2019Dec 12, 2019

• hicBuildMatrixCpp

  Public
  C++ implementation of hicBuildMatrix

  C++

  •

  MIT License

  •2•2•0•0•Updated Oct 16, 2019Oct 16, 2019

• docker-hicbrowser

  Public
  Docker container for easy deployment of the HiCBrowser

  Dockerfile

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Aug 11, 2019Aug 11, 2019

• deeptools_intervals

  Public
  A python library for constructing interval trees with associated exon/annotation information

  bioinformaticsinterval-treegtf+ 1bed

  C

  •

  MIT License

  •2•6•2•0•Updated Aug 7, 2019Aug 7, 2019

• docker-galaxy-hicexplorer

  Public
  Galaxy Docker Image for the HiCExplorer

  HTML

  •

  MIT License

  •3•10•3•0•Updated Mar 3, 2019Mar 3, 2019