Repositories list

• cytoscape-web

  Public
  TypeScript

  •

  MIT License

  •5•5•1•1•Updated Nov 9, 2024Nov 9, 2024

• web-cytoscape-manual

  Public
  Holds documentation for Cytoscape Web

  Makefile

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

• cytoscape-impl

  Public
  Cytoscape 3 implementation bundles.

  Java

  •

  GNU Lesser General Public License v2.1

  •42•36•0•0•Updated Nov 8, 2024Nov 8, 2024

• iregulon-webapp

  Public
  JavaScript

  •

  MIT License

  •0•1•15•0•Updated Nov 8, 2024Nov 8, 2024

• cytoscape.js

  Public
  Graph theory (network) library for visualisation and analysis

  networkcytoscapejsjavascript+ 3analysisvisualisationgraph-theory

  JavaScript

  •

  MIT License

  •1.6k•10k•16•4•Updated Nov 8, 2024Nov 8, 2024

• cytoscape.js-pdf-export

  Public
  PDF export extension for Cytoscape.js

  JavaScript

  •

  MIT License

  •0•0•1•0•Updated Nov 7, 2024Nov 7, 2024

• cytoscape-tutorials

  Public
  Collection of modular Cytoscape tutorials for online presentation using reveal.js

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •118•312•26•13•Updated Nov 7, 2024Nov 7, 2024

• cytoscape.js-cxtmenu

  Public
  Context menu for Cytoscape.js

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •83•167•0•1•Updated Nov 5, 2024Nov 5, 2024

• network-ptm-integration

  Public
  This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).

  R

  •

  MIT License

  •0•0•5•0•Updated Nov 4, 2024Nov 4, 2024

• cytoscape-pmcfigurebot

  Public
  Query figures indexed by PubMed Central and collect metadata

  R

  •

  Creative Commons Zero v1.0 Universal

  •4•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• RCy3

  Public
  New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

  R

  •

  MIT License

  •20•50•6•0•Updated Oct 30, 2024Oct 30, 2024

• cytoscape.js-popper

  Public
  A wrapper for Popper.js that lets you position divs relative to Cytoscape elements

  JavaScript

  •

  MIT License

  •23•97•0•2•Updated Oct 30, 2024Oct 30, 2024

• js4cytoscape

  Public
  JavaScript library for calling Cytoscape Automation via CyREST

  JavaScript

  •

  MIT License

  •4•3•1•0•Updated Oct 29, 2024Oct 29, 2024

• cytoscape.js-compound-drag-and-drop

  Public
  Compound node drag-and-drop UI for adding and removing children

  JavaScript

  •

  MIT License

  •16•33•0•0•Updated Oct 29, 2024Oct 29, 2024

• cytoscape.js-dagre

  Public
  The Dagre layout for DAGs and trees for Cytoscape.js

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •83•251•0•1•Updated Oct 29, 2024Oct 29, 2024

• cytoscape.js-klay

  Public
  The Klay layout algorithm for Cytoscape.js

  JavaScript

  •

  MIT License

  •41•87•0•4•Updated Oct 28, 2024Oct 28, 2024

• cytoscape.js-cola

  Public
  The Cola.js physics simulation layout for Cytoscape.js

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •66•151•0•1•Updated Oct 28, 2024Oct 28, 2024

• cytoscape.js-automove

  Public
  An extension for Cytoscape.js that automatically updates node positions based on specified rules

  cytoscapejscytoscapejs-extension

  JavaScript

  •

  MIT License

  •11•33•0•0•Updated Oct 28, 2024Oct 28, 2024

• cytoscape-manual

  Public
  Markdown version of Cytoscape manual

  Creative Commons Zero v1.0 Universal

  •23•11•0•0•Updated Oct 24, 2024Oct 24, 2024

• cyBrowser

  Public
  Java

  •3•1•2•2•Updated Oct 24, 2024Oct 24, 2024

• cytoscape-gui-distribution

  Public
  Cytoscape 3 desktop version.

  Java

  •18•17•0•3•Updated Oct 24, 2024Oct 24, 2024

• cytoscape.github.com

  Public
  Cytoscape org web site.

  HTML

  •16•22•1•0•Updated Oct 24, 2024Oct 24, 2024

• cytoscape-api

  Public
  Cytoscape 3 API bundles.

  Java

  •

  GNU Lesser General Public License v2.1

  •34•22•0•0•Updated Oct 24, 2024Oct 24, 2024

• cytoscape-admin-scripts

  Public
  Build and maintenance scripts for Cytoscape core developers.

  Jupyter Notebook

  •5•2•1•0•Updated Oct 24, 2024Oct 24, 2024

• cytoscape

  Public
  Cytoscape: an open source platform for network analysis and visualization

  Shell

  •139•577•0•1•Updated Oct 24, 2024Oct 24, 2024

• cytocontainer-rest-server

  Public
  Java

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• cytocontainer-rest-model

  Public
  Java

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• cytoscapeweb-website

  Public archive
  Cytoscape Web's Website and documentation

  HTML

  •1•0•0•0•Updated Oct 10, 2024Oct 10, 2024

• old-cytoscapeweb-redirected

  Public
  This hosts a landing page that directs old cytoscapeweb users to cytoscape.js and the new cytoscape web projects

  CSS

  •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

• ipycytoscape

  Public
  A Cytoscape Jupyter widget

  binderjupyter-notebookcytoscape

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •62•269•62•13•Updated Oct 7, 2024Oct 7, 2024