crisprVerse

All

19 repositories

crisprDesignData
Public
Useful human and mouse data for the crisprVerse ecosystem
bioconductor crispr-analysis crispr crispr-target crispr-cas9 grna grna-sequence bioconductor-package sgrna crispr-design
R
•
MIT License
•0•5•0•0•Updated Oct 23, 2024Oct 23, 2024
crisprDesignAux
Public
Auxiliary functions to the crisprDesign package
R
•
MIT License
•0•0•0•0•Updated Oct 23, 2024Oct 23, 2024
screenCounter
Public
Get barcode counts from functional genomics screens
C++
•
MIT License
•0•3•1•0•Updated Oct 23, 2024Oct 23, 2024
crisprScoreData
Public
Pre-trained models for the crisprScore package
bioconductor crispr-analysis crispr crispr-target scoring-models crispr-cas9 grna grna-sequence bioconductor-package sgrna
R
•
Other
•0•2•0•0•Updated Oct 23, 2024Oct 23, 2024
crisprBwa
Public
BWA-based alignment of CRISPR gRNA spacer sequences
bioconductor crispr-analysis crispr bwa crispr-target aligner crispr-cas9 grna grna-sequence bioconductor-package
R
•
MIT License
•0•1•0•0•Updated Oct 23, 2024Oct 23, 2024
crisprBowtie
Public
Bowtie-based alignment of CRISPR gRNA spacer sequences
bioconductor crispr-analysis crispr crispr-target bowtie aligner crispr-cas9 grna grna-sequence bioconductor-package
R
•
MIT License
•0•3•0•0•Updated Oct 23, 2024Oct 23, 2024
crisprScore
Public
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
genomics bioconductor crispr crispr-target crispr-cas9 grna grna-sequence bioconductor-package scoring-algorithm sgrna
Python
•
MIT License
•3•15•6•0•Updated Oct 4, 2024Oct 4, 2024
.github
Public
MIT License
•0•0•0•0•Updated Aug 6, 2024Aug 6, 2024
Tutorials
Public
Tutorials for the crisprVerse
crispr-analysis crispr genome-analysis crispr-target bowtie grna grna-sequence cas12a crispr-design crispr-cas
TeX
•
MIT License
•0•10•2•0•Updated Jul 25, 2024Jul 25, 2024
crisprBase
Public
Base functions and classes for CRISPR gRNA design
bioconductor crispr crispr-target crispr-cas9 grna rpackage grna-sequence bioconductor-package crispr-design grna-sequences
R
•
MIT License
•0•5•1•0•Updated Jul 23, 2024Jul 23, 2024
kaori
Public
C++ library for barcode counting
C++
•
MIT License
•0•0•2•0•Updated Jul 18, 2024Jul 18, 2024
crisprDesign
Public
Comprehensive design of CRISPR gRNAs for nucleases and base editors
bioconductor crispr crispr-target crispr-cas9 grna grna-sequence bioconductor-package sgrna crispr-design sgrna-design
R
•
MIT License
•6•20•10•0•Updated Jul 18, 2024Jul 18, 2024
crisprScreen
Public
0•0•0•0•Updated Jul 16, 2024Jul 16, 2024
crisprViz
Public
Visualization of CRISPR guide RNAs (gRNAs)
visualization bioconductor crispr-analysis crispr grna grna-sequence bioconductor-package sgrna crispr-design sgrna-design
R
•
MIT License
•1•6•0•0•Updated Apr 2, 2024Apr 2, 2024
crisprShiny
Public
Shiny interface for CRISPR gRNAs designed with the crisprVerse
shiny crispr-analysis crispr crispr-design
R
•
MIT License
•0•2•0•0•Updated Jan 31, 2024Jan 31, 2024
Rbwa
Public
R wrapper for BWA-backtrack and BWA-MEM aligners
alignment bwa bwa-mem dna-sequences dna-sequencing
C
•
MIT License
•1•0•0•0•Updated Jun 29, 2023Jun 29, 2023
crisprVerse
Public
Collection of R packages that work in harmony for CRISPR gRNA design
crispr-analysis crispr crispr-target grna grna-sequence crispr-design grna-sequences
R
•
MIT License
•0•12•1•0•Updated Feb 28, 2023Feb 28, 2023
crisprVersePaper
Public
Manuscript and analyses for crisprVerse manuscript
TeX
•0•2•0•0•Updated Oct 20, 2022Oct 20, 2022
Docker
Public
Dockerfile
•
MIT License
•1•0•1•0•Updated Sep 2, 2022Sep 2, 2022