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    • QC of CCHC proteomics batch2
      MIT License
      0000Updated Oct 31, 2024Oct 31, 2024
    • compadre

      Public
      IBD-based pedigree generation software, built on top of and maximizing utility from the tools PRIMUS and ERSA
      Perl
      0011Updated Oct 22, 2024Oct 22, 2024
    • Gets gene associations from Bioindex
      Python
      0000Updated Oct 18, 2024Oct 18, 2024
    • drive

      Public
      A cli tool to analyze ibd sharing for a specific locus for multiple phenotypes
      Python
      Apache License 2.0
      1000Updated Oct 13, 2024Oct 13, 2024
    • ldsc

      Public
      LD Score Regression (LDSC)
      HTML
      GNU General Public License v3.0
      343900Updated Oct 7, 2024Oct 7, 2024
    • HTML
      0000Updated Oct 1, 2024Oct 1, 2024
    • R
      1000Updated Sep 19, 2024Sep 19, 2024
    • hap-ibd

      Public
      The hap-ibd program detects identity-by-descent segments in phased genotype data.
      Java
      8000Updated Sep 16, 2024Sep 16, 2024
    • McBias

      Public
      McBias is an r package designed to help estimate the effects of bias found in large datasets of convenience
      R
      1000Updated Sep 11, 2024Sep 11, 2024
    • Jupyter Notebook
      MIT License
      0001Updated Aug 13, 2024Aug 13, 2024
    • PyVCF3

      Public
      A Variant Call Format reader for Python.
      Python
      Other
      224000Updated Aug 12, 2024Aug 12, 2024
    • A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      BSD 3-Clause "New" or "Revised" License
      4.9k000Updated Aug 9, 2024Aug 9, 2024
    • A conda-smithy repository for conda-forge-pinning.
      Python
      BSD 3-Clause "New" or "Revised" License
      499000Updated Jul 25, 2024Jul 25, 2024
    • 📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
      Dockerfile
      GNU General Public License v3.0
      119000Updated Jul 18, 2024Jul 18, 2024
    • xcftools

      Public
      Set of tools for handling XCF files
      C++
      3000Updated Jul 18, 2024Jul 18, 2024
    • shapeit5

      Public
      Segmented HAPlotype Estimation and Imputation Tool
      C++
      MIT License
      11000Updated Jul 18, 2024Jul 18, 2024
    • htslib

      Public
      C library for high-throughput sequencing data formats
      C
      Other
      447000Updated Jul 9, 2024Jul 9, 2024
    • 0000Updated May 2, 2024May 2, 2024
    • vcflib

      Public
      C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
      C++
      MIT License
      221000Updated Apr 29, 2024Apr 29, 2024
    • Jupyter Notebook
      0000Updated Apr 22, 2024Apr 22, 2024
    • gargle

      Public
      Infrastructure for calling Google APIs from R, including auth
      R
      Other
      33000Updated Apr 1, 2024Apr 1, 2024
    • peer

      Public
      A factor analysis package
      C++
      Other
      41001Updated Mar 28, 2024Mar 28, 2024
    • r-peer

      Public
      A readonly copy of peer packaged as an github_install capable R package
      C++
      Other
      0000Updated Mar 26, 2024Mar 26, 2024
    • patchwork

      Public
      The Composer of ggplots
      R
      Other
      163000Updated Mar 25, 2024Mar 25, 2024
    • MetaXcan

      Public
      MetaXcan software and manuscript
      Python
      Other
      92001Updated Mar 10, 2024Mar 10, 2024
    • phaser

      Public
      phasing and Allele Specific Expression from RNA-seq
      Python
      GNU General Public License v3.0
      36000Updated Mar 8, 2024Mar 8, 2024
    • plink-ng

      Public
      A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.
      C
      125000Updated Feb 29, 2024Feb 29, 2024
    • SAIGE-1

      Public
      Development for SAIGE and SAIGE-GENE(+)
      C++
      GNU General Public License v3.0
      29000Updated Feb 26, 2024Feb 26, 2024
    • This is the development home of the Snakemake wrapper repository, see
      Python
      186000Updated Feb 23, 2024Feb 23, 2024
    • iLASH

      Public
      iLASH - IBD Estimation Using Locality Sensitive Hashing
      C++
      Other
      3000Updated Feb 15, 2024Feb 15, 2024