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    22 repositories

    • demo-uptime

      Public
      Uptime Monitoring of the demo page and services
      uptime-monitorstatus-pageupptime
      JSON
      •
      MIT License
      •0•0•5•0•Updated Dec 23, 2025Dec 23, 2025

    • ratiopath

      Public
      Python
      •
      MIT License
      •0•2•2•1•Updated Dec 22, 2025Dec 22, 2025

    • xopat

      Public
      Histopatholical visualization toolkit based on OpenSeaDragon.
      JavaScript
      •
      MIT License
      •9•29•1•2•Updated Dec 17, 2025Dec 17, 2025

    • openseadragon

      Public
      An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •684•1•0•0•Updated Dec 15, 2025Dec 15, 2025

    • WSI-Service

      Public
      Versatile WSI server originally written by Empaia
      Python
      •
      Other
      •6•4•0•0•Updated Dec 10, 2025Dec 10, 2025

    • OpenSeadragonFiltering

      Public
      OpenSeadragon filtering plugin
      JavaScript
      •
      Other
      •32•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • lsp-detr

      Public
      MIT License
      •0•1•0•0•Updated Nov 12, 2025Nov 12, 2025

    • browser

      Public
      Simple, information-system-like file browser for xOpat.
      PHP
      •
      MIT License
      •0•1•0•0•Updated Oct 21, 2025Oct 21, 2025

    • EmpationAPI

      Public
      Lightweight JS library for communication with the empaia workbench service.
      TypeScript
      •0•0•0•0•Updated Jun 2, 2025Jun 2, 2025

    • mirax-importer

      Public
      Simple web interface for uploading mirax files to a server.
      PHP
      •0•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • NOR-cleaner

      Public
      AI model for resolving duplicities in Czech National Oncology Register
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

    • XAI-toolkit

      Public
      XAI-toolkit
      0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • pyOIDCIntegration

      Public
      OIDC for services in python.
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • openslide

      Public
      C library for reading virtual slide images
      C
      •
      GNU Lesser General Public License v2.1
      •246•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • xOpat-Ext-js

      Public
      xOpat extension template helper
      0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • case-viewer

      Public
      Official Case Viewer for xOpat
      TypeScript
      •
      MIT License
      •0•1•0•0•Updated Aug 8, 2024Aug 8, 2024

    • prostate-cancer

      Public
      An implementation of a pipeline for training a binary classifier to detect prostate cancer using Whole Slide Images (WSIs). Built with PyTorch Lightning, Hydra and MlFlow
      Python
      •
      MIT License
      •0•1•0•0•Updated Jun 17, 2024Jun 17, 2024

    • xopat-docker

      Public
      Docker container for Pathopus
      Dockerfile
      •
      MIT License
      •0•3•0•0•Updated Feb 13, 2024Feb 13, 2024

    • crc_ml-provenance

      Public
      Python
      •0•3•0•0•Updated Nov 30, 2023Nov 30, 2023

    • xo_db

      Public
      Metadata Database Proxy on postgres.
      PHP
      •
      MIT License
      •0•0•0•0•Updated Apr 5, 2023Apr 5, 2023

    • iipsrv

      Public
      iipsrv is an advanced high-performance feature-rich image server for web-based streamed viewing and zooming of ultra high-resolution images.
      C++
      •
      GNU General Public License v3.0
      •121•0•0•0•Updated Mar 17, 2023Mar 17, 2023

    • WSI-anonymity

      Public
      Tools for analysis of privacy risks related to sharing Whole Slide Images in digital pathology research.
      Python
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Jan 18, 2023Jan 18, 2023