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@NFDI4BIOIMAGE NFDI4BioImage

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    18 repositories

    • training

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •7•12•56•11•Updated Dec 24, 2024Dec 24, 2024

    • BioHackathon24

      Public
      Repository for de.NBI24 BioHackathon project: "Increasing interoperability of bioimage dataset resources"
      TeX
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • nfdi_search_engine

      Public
      search engine for the NFDI4BIOIMAGE materials(Docker Version)
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•13•3•Updated Dec 17, 2024Dec 17, 2024

    • omero-kg-benchmark

      Public
      Repository for subproject P4 "Endpoint Drafting and Testing", part of project "Increasing interoperability of bioimage dataset resources"at the 2024 deNBI BioHackathon
      benchmarkingrdfomerosparql-querysparql-endpointsbioimagingvirtual-knowledge-graph
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Dec 13, 2024Dec 13, 2024

    • SlideInsight

      Public
      A collection of notebooks for gaining insights into presentation slides through multimodal AI models.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•3•3•0•Updated Dec 11, 2024Dec 11, 2024

    • Postcards-2024

      Public
      Illustrations were contracted by the Heinrich Heine University of Düsseldorf in the frame of the consortium NFDI4BIOIMAGE from Henning Falk for the purpose of education and public outreach (CC-BY)
      rdmnfdinfdi4bioimage
      Creative Commons Attribution 4.0 International
      •1•8•0•0•Updated Nov 30, 2024Nov 30, 2024

    • omero-vitessce

      Public
      OMERO.web plugin for the Vitessce multimodal data viewer.
      omeroomero-webmultimodalspatial-transcriptomicsvitesscespatial-omicsnfdi4bioimage
      Python
      •
      GNU Affero General Public License v3.0
      •0•5•0•0•Updated Nov 25, 2024Nov 25, 2024

    • search_engine

      Public
      search engine for the NFDI4BIOIMAGE materials
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•16•0•Updated Oct 8, 2024Oct 8, 2024

    • irods_k8s

      Public
      PLpgSQL
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • licensing

      Public
      0•0•1•0•Updated Jul 11, 2024Jul 11, 2024

    • FAIR-IO

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • napari-plugin-template

      Public
      MIT License
      •0•0•3•0•Updated May 28, 2024May 28, 2024

    • omero-tabbles

      Public
      OMERO.web script to create Annotations in OMERO based on Tags from Tabbles
      omeroomero-scripts
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Apr 23, 2024Apr 23, 2024

    • git-demo-dataweek2024

      Public
      This repository serves as playground for the DataWeek Leipzig 2024
      The Unlicense
      •8•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • omero-scripts

      Public
      OMERO.web script to convert grey scale label images into OMERO Rois
      omeroomero-scripts
      Python
      •
      GNU General Public License v2.0
      •1•3•0•0•Updated Apr 10, 2024Apr 10, 2024

    • Cologne-Hackathon-2023

      Public
      Repository for documentation during and of the NFDI4Bioimage - TA3-Hackathon - UoC-2023 (in short: "Cologne Hackathon").
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Feb 22, 2024Feb 22, 2024

    • omero-arc-activities

      Public
      This repository collects, links and describes omero-arc interoperability activities.
      Creative Commons Attribution 4.0 International
      •0•0•5•0•Updated Feb 6, 2024Feb 6, 2024

    • BHG2023-OMERO-ARC

      Public
      Python
      •
      Creative Commons Attribution 4.0 International
      •4•0•0•0•Updated Feb 5, 2024Feb 5, 2024