Repositories list

• 2020507

  Public

  ModelDBRepository/2020507’s past year of commit activity
  Deciphering the modulatory role of direct pedunculopontine nucleus-cortical circuitry in absence seizure dynamics: A computational study (Bing Hu et al. 2025)

  MATLAB

  •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

• 2019587

  Public

  ModelDBRepository/2019587’s past year of commit activity
  The accumulation of extracellular K+ as in vivo model of epilepsy in CA1 pyramidal neurons (Carpentieri et al, accepted)

  neuron-simulator

  AGS Script

  •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

• 267103

  Public

  ModelDBRepository/267103’s past year of commit activity
  Look-Up Table Synapse (LUTsyn) models for AMPA and NMDA (Pham et al., 2021)

  multiscaleneuron-simulator

  NMODL

  •1•0•0•0•Updated Oct 17, 2025Oct 17, 2025

• 183017

  Public

  ModelDBRepository/183017’s past year of commit activity
  Noise promotes independent control of gamma oscillations and grid firing (Solanka et al 2015)

  1•0•0•0•Updated Oct 17, 2025Oct 17, 2025

• 2017404

  Public

  ModelDBRepository/2017404’s past year of commit activity
  C elegans olfactory transduction (Nicoletti et al. 2023)

  neuron-simulator

  NMODL

  •0•0•0•0•Updated Oct 7, 2025Oct 7, 2025

• 2018014

  Public

  ModelDBRepository/2018014’s past year of commit activity
  Model of dentate granule cell hyperexcitability in bipolar disorder, and the effects of lithium (Singh et al., 2025)

  neuron-simulator

  Jupyter Notebook

  •1•0•0•1•Updated Oct 7, 2025Oct 7, 2025

• 2019896

  Public

  ModelDBRepository/2019896’s past year of commit activity
  Inner retina; pathological retina spontaneous oscillation (Horie et al, 2025)

  neuron-simulator

  NMODL

  •1•0•0•1•Updated Oct 6, 2025Oct 6, 2025

• 2014826

  Public

  ModelDBRepository/2014826’s past year of commit activity
  iFGF14 Peptide Derivative Differentially Regulates Nav1.2 and Nav1.6 Function (Arman et al., 2025)

  neuron-simulator

  NMODL

  •0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

• 2019891

  Public

  ModelDBRepository/2019891’s past year of commit activity
  Dopamine modulation of Excitability and STDP in CA1 single neuron (Manara et al., 2025)

  neuron-simulator

  NMODL

  •0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

• 2019788

  Public

  ModelDBRepository/2019788’s past year of commit activity
  Songbird HVC(RA) neuron with mitochondria (Castelfranco and Alcami 2025)

  neuron-simulator

  NMODL

  •0•0•0•0•Updated Oct 2, 2025Oct 2, 2025

• 2018020

  Public
  SNc projection specific rebound responses (Stojanovic et al., 2025)

  neuron-simulator

  Python

  •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

• 2019343

  Public
  Computational Model of Optogenetic Inhibition of CA1 pyramidal neuron (Weyn et al., 2025)

  neuron-simulator

  Jupyter Notebook

  •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

• 2019877

  Public
  Cerebellar-thalamo-cortical brain network for sensorimotor communication (Romano et al., 2025)

  MATLAB

  •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

• 2019883

  Public
  Biophysical model of L5 Pyramidal Neuron (Headley, Latimer et al., 2025)

  neuron-simulator

  Jupyter Notebook

  •

  MIT License

  •1•0•0•1•Updated Sep 22, 2025Sep 22, 2025

• 2018628

  Public
  A biochemically detailed model of GABAB-receptor activation for pre- and postsynaptic domains. (Mäki-Marttunen et al., accepted)

  neuron-simulator

  Python

  •0•1•0•0•Updated Aug 8, 2025Aug 8, 2025

• 2018019

  Public
  Cerebellar stellate cell model (Rizza et al., 2021)

  neuron-simulator

  AGS Script

  •1•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• 2018018

  Public
  Cerebellar basket cell model (Masoli et al., 2025)

  neuron-simulator

  AGS Script

  •1•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• 2019791

  Public
  ASTRO Fig 5 K⁺ Dynamics in Fully Reconstructed Four CA1 Astrocytes (Savtchenko LP et al., 2018)

  neuron-simulator

  NMODL

  •1•0•0•0•Updated Jul 16, 2025Jul 16, 2025

• 154769

  Public
  Mixed mode oscillations as a mechanism for pseudo-plateau bursting (Vo et al. 2010)

  pituitary-cellbursting-oscillations-bifurcationxpp-web-link-to-model

  1•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• 182988

  Public
  TRPM8-dependent dynamic response in cold thermoreceptors (Olivares et al. 2015)

  neuron-simulatorbursting-temporal-pattern-generation-oscillations-dorsal-root-ganglion-drg-cell-dorsal-root-ganglion

  Python

  •1•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• 182906

  Public
  Neural-field model of generalized seizures (Zhao et al., 2015)

  matlabepilepsy

  MATLAB

  •1•1•0•0•Updated Jul 10, 2025Jul 10, 2025

• 182843

  Public
  CA1 PV+ fast-firing hippocampal interneuron (Ferguson et al. 2013)

  action-potentialshippocampus-ca1-basket-cell-hippocampus-ca1-bistrabrian-python

  Python

  •2•2•0•0•Updated Jul 10, 2025Jul 10, 2025

• 182797

  Public
  Multi-comp. CA1 O-LM interneuron model with varying dendritic Ih distributions (Sekulic et al 2015)

  neuron-simulatorhippocampus-ca1-stratum-oriens-lacunosum-moleculardendritic-action-potentials-active-dendrites-detai

  AMPL

  •1•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• 182785

  Public
  3D-printer visualization of NEURON models (McDougal and Shepherd, 2015)

  methodsneuron-simulator

  Python

  •1•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• 182784

  Public
  Functional balanced networks with synaptic plasticity (Sadeh et al, 2015)

  pythonabstract-integrate-and-fire-leaky-neuronsynaptic-plasticity-long-term-synaptic-plasticity-

  Python

  •2•1•0•1•Updated Jul 10, 2025Jul 10, 2025

• 182759

  Public
  Orientation selectivity in inhibition-dominated recurrent networks (Sadeh and Rotter, 2015)

  abstract-integrate-and-fire-leaky-neuronoscillations-synchronization-simplified-models-synnest-python

  Python

  •1•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• 182758

  Public

  ModelDBRepository/182758’s past year of commit activity
  Activity patterns in a subthalamopallidal network of the basal ganglia model (Terman et al 2002)

  neuron-simulatoractivity-patterns-spatio-temporal-activity-patternsubthalamic-nucleus-principal-gaba-cell-globus-pal

  Python

  •3•4•0•1•Updated Jul 10, 2025Jul 10, 2025

• 182685

  Public

  ModelDBRepository/182685’s past year of commit activity
  Models of Vector Navigation with Grid Cells (Bush et al., 2015)

  matlabspatial-navigation-grid-cell

  MATLAB

  •1•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• 182515

  Public
  CA1 pyramidal neuron (Ferguson et al. 2014)

  hippocampus-ca1-pyramidal-glu-cell-abstract-izhikesimplified-models-rebound-firingbrian-python

  Python

  •1•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• 182373

  Public

  ModelDBRepository/182373’s past year of commit activity
  Inhibitory cells enable sparse coding in V1 model (King et al. 2013)

  pattern-recognitionabstract-integrate-and-fire-leaky-neuronmatlab-web-link-to-model

  1•0•0•0•Updated Jul 10, 2025Jul 10, 2025