Repositories list

• GTEx_Brains

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Apr 3, 2020Apr 3, 2020

• gtex-pipeline

  Public
  GTEx & TOPMed data production and analysis pipelines

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •177•0•0•0•Updated Mar 27, 2020Mar 27, 2020

• GTEx_infil

  Public
  Demographic and genetic factors influence the abundance of infiltrating immune cells in human tissues

  R

  •

  MIT License

  •2•0•0•0•Updated Mar 26, 2020Mar 26, 2020

• RRHO_RNAseq

  Public
  Run RRHO on RNA seq data using brainSpan RNAseq

  R

  •2•0•0•0•Updated Jan 17, 2020Jan 17, 2020

• somatic_mutations_GTEx

  Public
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations

  R

  •12•0•0•0•Updated Jan 5, 2020Jan 5, 2020

• GTEx_adipose_tissue

  Public
  HTML

  •1•0•0•0•Updated Dec 26, 2019Dec 26, 2019

• gwas2bed

  Public
  Extracting disease-specific genomic coordinates from GWAS catalog

  HTML

  •4•0•0•0•Updated Nov 29, 2019Nov 29, 2019

• GTEx

  Public
  tools for exploring tissue-specific gene expression from the GTEx Project

  R

  •

  MIT License

  •1•0•0•0•Updated Nov 12, 2019Nov 12, 2019

• gtex-estrs

  Public
  Analyzing eSTRs in GTEx data

  Jupyter Notebook

  •6•0•0•0•Updated Nov 5, 2019Nov 5, 2019

• CoExpGTEx

  Public
  GTEx co-expression networks from RPKM-V6 gene level expression data

  R

  •2•0•0•0•Updated Nov 4, 2019Nov 4, 2019

• dev-neuro-brainspan

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Aug 24, 2019Aug 24, 2019

• gtex-2

  Public
  Scripts to process and format GTEx eQTLs

  Python

  •1•0•0•0•Updated Jun 29, 2019Jun 29, 2019

• tidy_GTEx

  Public
  The GTEx data in a tidy format for use in R

  R

  •1•0•0•0•Updated May 5, 2019May 5, 2019

• gtex_BRCA

  Public
  R

  •13•0•0•0•Updated Mar 9, 2019Mar 9, 2019

• tumornormal

  Public
  Classifying TCGA+TARGET+GTEX Gene Expression Data

  Jupyter Notebook

  •

  Apache License 2.0

  •4•0•0•0•Updated Mar 3, 2019Mar 3, 2019

• GTExR

  Public
  Package for GTEx data analysis with R

  R

  •2•0•0•0•Updated Jan 21, 2019Jan 21, 2019

• Brain_genomic_data

  Public
  Brain-related -omics data

  6•0•0•0•Updated Jan 5, 2019Jan 5, 2019

• gtex-1

  Public
  Exploratory analyses of GTEx data.

  R

  •

  MIT License

  •2•0•0•0•Updated Dec 6, 2018Dec 6, 2018

• brainspan

  Public
  R

  •1•0•0•0•Updated Jul 30, 2018Jul 30, 2018

• BrainSpan-analysis

  Public
  R

  •2•0•0•0•Updated Apr 4, 2018Apr 4, 2018

• BrainspanCorrelation

  Public
  R script for calculating Gene expression correlation using Brainspan expression dataset

  brainspan

  2•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• hajaramini

  Public
  WGCNA

  0•0•0•0•Updated Feb 15, 2018Feb 15, 2018

• MT-eQTL

  Public
  Multi-Tissue eQTL

  MATLAB

  •1•0•0•0•Updated Dec 26, 2017Dec 26, 2017

• Predicting-Age-Gene-Expression

  Public
  Using GTEx tissue specific cis-eQTL gene expression to predict age

  Jupyter Notebook

  •2•0•0•0•Updated Nov 26, 2017Nov 26, 2017

• GTExV6PRareVariation

  Public
  Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript

  R

  •14•0•0•0•Updated Nov 13, 2017Nov 13, 2017

• GTExExtractor

  Public
  GTExExtractor is a script that will download and parse individual-level GTEx data set for all tissues and GTEx sample IDs, and output gene RPKMs for the provided gene list that correspond to the tissue of interest, in a form of violin plots.

  Shell

  •2•0•0•0•Updated Aug 31, 2017Aug 31, 2017

• WGCNA_RNAEditing

  Public
  Running WGCNA on RNA editing measurements in the "BrainSpan" dataset

  R

  •2•0•0•0•Updated May 31, 2017May 31, 2017

• pygenesig-example

  Public
  Create tissue signatures on the GTEx dataset using different methods.

  Jupyter Notebook

  •1•0•0•0•Updated Apr 12, 2017Apr 12, 2017

• tissueSpecificExpression

  Public
  Calculate tissue specific gene expression in GTEx tissue samples.

  Perl

  •2•0•0•0•Updated Apr 2, 2017Apr 2, 2017

• Gene-Expression-Networks-3-Brain-Region-R

  Public
  Construction of Gene Expression Network across 3 brain regions in the presence of Ethanol using WGCNA in R

  R

  •1•0•0•0•Updated Mar 20, 2017Mar 20, 2017