Documentation structure proposal

[DriesSchaumont]

> = subsection
- = menu entry
[] = paragraph
? = need to decide where to put
* = somewhere on page

HOME
	> What is openpipelines
	> View workflows -> link naar workflows
	> Getting started
		[ Installing viash and nextflow
		+  Running full pipeline ]

USER GUIDE
	- Which workflow is right for me? (=usecases)
	- Running a pipeline/component
	  > nf-tower
	  	[sending to nf-tower from cli and adding workflows to nf-tower]
	  > cli
	  	[nextflow]
	- Troubleshooting
	- Data API
		[ Anndata and MuData objects ]
	- Releases


WORKFLOWS -> item for every workflow (but not in menu)
       Structure still to decide, but must contain: 
	* Tag voor de workflows
	* Statistics (download, ...)
	* Link to sourcecode
	> Introduction
	> Example input/output -> from test-data? (hosted on s3?)
	> Input
	> Output
	> RUN from nf-tower
	> RUN from cli
	> Workflow diagram of components + basis input and output information

COMPONENTS -> item voor every component (but not in menu)
       Structure still to decide, but must contain: 
	* Tags voor iedere component
	* Statistics (download, ...)
	* Link to sourcecode
	> Introduction
        > Example input/output -> from test-data? (hosted on s3?)
	> Component input (type, description, )
	> Component output
	> Run from CLI
		[ files on s3 ]
	> RUN from nf-tower
		[ files on s3 ]
	> In which workflows is this component being used?

CONTRIBUTING
	- Getting started
		> Forking and cloning the code
		> Development options ()
		> Project structure
	- Creating a component
		> From script to component
		> Configuring containers
		> Writing tests (viashpy)
	- Creating a workflow
		> Using workflowhelpers/utilities (including params_list)
		> Inputs for multiple files
		> Writing tests
	- Testing
		> Github Actions
		> NF-tower
	- Publishing your changes
	    > Branching stratefgy
		> Creating a pull request
                 > Updating your pull request
	- Code of conduct
	? Creating a new release
	- Code style
	- Debugging workflows
		[intermitend issues --> hyperfine]
	- Design decisions

ABOUT
	- Openpipelines
	- Viash
	- Nextflow
	- Team/Authors
	- Code of conduct