Changing version to 1.0.0 for release

imedina · imedina · commit fd056d2e45e5 · 2017-03-17T05:12:28.000Z
diff --git a/opencga-analysis/pom.xml b/opencga-analysis/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>..</relativePath>
     </parent>
 
diff --git a/opencga-app/pom.xml b/opencga-app/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-catalog/pom.xml b/opencga-catalog/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-client/pom.xml b/opencga-client/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-core/pom.xml b/opencga-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-server/pom.xml b/opencga-server/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-app/pom.xml b/opencga-storage/opencga-storage-app/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-core/pom.xml b/opencga-storage/opencga-storage-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-core/src/main/java/org/opencb/opencga/storage/core/variant/annotation/annotators/CellBaseRestVariantAnnotator.java b/opencga-storage/opencga-storage-core/src/main/java/org/opencb/opencga/storage/core/variant/annotation/annotators/CellBaseRestVariantAnnotator.java
@@ -37,7 +37,7 @@ public CellBaseRestVariantAnnotator(StorageConfiguration storageConfiguration, O
         ClientConfiguration clientConfiguration = storageConfiguration.getCellbase().toClientConfiguration();
         clientConfiguration.getRest().setTimeout(TIMEOUT);
         CellBaseClient cellBaseClient;
-        cellBaseClient = new CellBaseClient(species, assembly, clientConfiguration);
+        cellBaseClient = new CellBaseClient(species, clientConfiguration);
         this.cellBaseClient = cellBaseClient;
 
         logger.info("Annotating with Cellbase REST. host '{}', version '{}', species '{}', assembly '{}'",
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/main/java/org/opencb/opencga/storage/hadoop/variant/adaptors/VariantHadoopDBAdaptor.java b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/main/java/org/opencb/opencga/storage/hadoop/variant/adaptors/VariantHadoopDBAdaptor.java
@@ -120,7 +120,7 @@ public VariantHadoopDBAdaptor(Connection connection, HBaseCredentials credential
         if (StringUtils.isEmpty(species)) {
             species = clientConfiguration.getDefaultSpecies();
         }
-        cellBaseClient = new CellBaseClient(AbstractCellBaseVariantAnnotator.toCellBaseSpeciesName(species), assembly, clientConfiguration);
+        cellBaseClient = new CellBaseClient(AbstractCellBaseVariantAnnotator.toCellBaseSpeciesName(species), clientConfiguration);
 
         clientSideSkip = !options.getBoolean(PhoenixHelper.PHOENIX_SERVER_OFFSET_AVAILABLE, true);
         this.queryParser = new VariantSqlQueryParser(genomeHelper, this.variantTable, new VariantDBAdaptorUtils(this),
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-deps/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-deps/pom.xml
@@ -50,13 +50,13 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <!--<relativePath>../pom.xml</relativePath>-->
     </parent>
 
     <!--<groupId>org.opencb.opencga</groupId>-->
     <artifactId>opencga-storage-hadoop-deps</artifactId>
-    <version>1.0.0-final-SNAPSHOT</version>
+    <version>1.0.0</version>
 
     <properties>
         <checkstyle.skip>true</checkstyle.skip>
diff --git a/opencga-storage/opencga-storage-hadoop/pom.xml b/opencga-storage/opencga-storage-hadoop/pom.xml
@@ -20,17 +20,17 @@
          xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
     <modelVersion>4.0.0</modelVersion>
     <properties>
-        <opencga-storage-hadoop-deps.version>${opencga.version}-SNAPSHOT</opencga-storage-hadoop-deps.version>
+        <opencga-storage-hadoop-deps.version>${opencga.version}</opencga-storage-hadoop-deps.version>
     </properties>
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
     <artifactId>opencga-storage-hadoop</artifactId>
-    <version>1.0.0-final</version>
+    <version>1.0.0</version>
     <packaging>pom</packaging>
 
     <modules>
@@ -43,7 +43,7 @@
             <id>opencga-storage-hadoop-deps</id>
             <activation>
                 <file>
-                    <missing>${user.home}/.m2/repository/org/opencb/opencga/opencga-storage-hadoop-deps/1.0.0-final-SNAPSHOT/opencga-storage-hadoop-deps-1.0.0-final-SNAPSHOT.jar</missing>
+                    <missing>${user.home}/.m2/repository/org/opencb/opencga/opencga-storage-hadoop-deps/1.0.0/opencga-storage-hadoop-deps-1.0.0.jar</missing>
                 </file>
             </activation>
             <modules>
diff --git a/opencga-storage/opencga-storage-mongodb/pom.xml b/opencga-storage/opencga-storage-mongodb/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-mongodb/src/main/java/org/opencb/opencga/storage/mongodb/variant/adaptors/VariantMongoDBAdaptor.java b/opencga-storage/opencga-storage-mongodb/src/main/java/org/opencb/opencga/storage/mongodb/variant/adaptors/VariantMongoDBAdaptor.java
@@ -163,7 +163,7 @@ public VariantMongoDBAdaptor(MongoDataStoreManager mongoManager, MongoCredential
         if (StringUtils.isEmpty(species)) {
             species = clientConfiguration.getDefaultSpecies();
         }
-        cellBaseClient = new CellBaseClient(AbstractCellBaseVariantAnnotator.toCellBaseSpeciesName(species), assembly, clientConfiguration);
+        cellBaseClient = new CellBaseClient(AbstractCellBaseVariantAnnotator.toCellBaseSpeciesName(species), clientConfiguration);
         this.cacheManager = new CacheManager(storageConfiguration);
         this.variantSearchManager = new VariantSearchManager(utils, storageConfiguration);
         NUMBER_INSTANCES.incrementAndGet();
diff --git a/opencga-storage/opencga-storage-server/pom.xml b/opencga-storage/opencga-storage-server/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/pom.xml b/opencga-storage/pom.xml
@@ -22,13 +22,13 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.0.0-final</version>
+        <version>1.0.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
     <!-- Version must be set to a literal, variables cannot be used in nested modules -->
     <artifactId>opencga-storage</artifactId>
-    <version>1.0.0-final</version>
+    <version>1.0.0</version>
     <packaging>pom</packaging>
 
     <properties>
diff --git a/opencga-test/pom.xml b/opencga-test/pom.xml
@@ -22,7 +22,7 @@
 
     <groupId>org.opencb.opencga</groupId>
     <artifactId>opencga-test</artifactId>
-    <version>1.0.0-final</version>
+    <version>1.0.0</version>
     <packaging>pom</packaging>
 
     <dependencies>
diff --git a/pom.xml b/pom.xml
@@ -22,7 +22,7 @@
 
     <groupId>org.opencb.opencga</groupId>
     <artifactId>opencga</artifactId>
-    <version>1.0.0-final</version>
+    <version>1.0.0</version>
     <packaging>pom</packaging>
 
     <modules>
@@ -36,12 +36,12 @@
     </modules>
 
     <properties>
-        <opencga.version>1.0.0-final</opencga.version>
+        <opencga.version>1.0.0</opencga.version>
         <java.version>1.8</java.version>
-        <biodata.version>1.0.0-SNAPSHOT</biodata.version>
-        <cellbase.version>4.5.0-SNAPSHOT</cellbase.version>
-        <java-common-libs.version>3.4.1-SNAPSHOT</java-common-libs.version>
-        <hpg-bigdata.version>1.0.0-beta2-SNAPSHOT</hpg-bigdata.version>
+        <biodata.version>1.0.0</biodata.version>
+        <cellbase.version>4.5.0-rc.1</cellbase.version>
+        <java-common-libs.version>3.4.1</java-common-libs.version>
+        <hpg-bigdata.version>1.0.0-beta1</hpg-bigdata.version>
         <jackson.version>2.6.6</jackson.version>
         <jersey.version>2.23</jersey.version>
         <hadoop.version>2.7.1</hadoop.version>
