Merge branch 'release-2.2.x'

Author: imedina

biodata-external/pom.xml

@@ -6,7 +6,7 @@
     <parent>
         <artifactId>biodata</artifactId>
         <groupId>org.opencb.biodata</groupId>
-        <version>2.2.1</version>
+        <version>2.2.2</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

biodata-formats/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.biodata</groupId>
         <artifactId>biodata</artifactId>
-        <version>2.2.1</version>
+        <version>2.2.2</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

biodata-models/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.biodata</groupId>
         <artifactId>biodata</artifactId>
-        <version>2.2.1</version>
+        <version>2.2.2</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

biodata-tools/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.biodata</groupId>
         <artifactId>biodata</artifactId>
-        <version>2.2.1</version>
+        <version>2.2.2</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
@@ -51,8 +51,15 @@
             <version>1.2.17</version>
         </dependency>
         <dependency>
-            <groupId>BigWig</groupId>
-            <artifactId>BigWig</artifactId>
+            <groupId>com.databricks</groupId>
+            <artifactId>SnpEff</artifactId>
+            <version>4.3.1</version>
+            <exclusions>
+                <exclusion>
+                    <groupId>junit</groupId>
+                    <artifactId>junit</artifactId>
+                </exclusion>
+            </exclusions>
         </dependency>
         <dependency>
             <groupId>org.rocksdb</groupId>

pom.xml

@@ -20,7 +20,7 @@
 
     <groupId>org.opencb.biodata</groupId>
     <artifactId>biodata</artifactId>
-    <version>2.2.1</version>
+    <version>2.2.2</version>
     <packaging>pom</packaging>
 
     <name>Biodata</name>
@@ -35,8 +35,8 @@
     </modules>
 
     <properties>
-        <biodata.version>2.2.1</biodata.version>
-        <commons.version>4.2.0</commons.version>
+        <biodata.version>2.2.2</biodata.version>
+        <commons.version>4.2.1</commons.version>
         <collections.version>4.4</collections.version>
         <avro.version>1.7.7</avro.version>
         <protobuf.version>3.9.2</protobuf.version>
@@ -114,10 +114,6 @@
                 <updatePolicy>daily</updatePolicy>
             </snapshots>
         </repository>
-        <repository>
-            <id>opencb-ext-libs</id>
-            <url>http://bioinfo.hpc.cam.ac.uk/downloads/ext-libs</url>
-        </repository>
     </repositories>
 
     <dependencyManagement>
@@ -199,11 +195,6 @@
                     </exclusion>
                 </exclusions>
             </dependency>
-            <dependency>
-                <groupId>BigWig</groupId>
-                <artifactId>BigWig</artifactId>
-                <version>1.0</version>
-            </dependency>
             <dependency>
                 <groupId>junit</groupId>
                 <artifactId>junit</artifactId>