From d334069a29cba703e7523bb6427f33180f3dd804 Mon Sep 17 00:00:00 2001 From: matt-fleming Date: Fri, 17 Mar 2023 14:34:40 +0000 Subject: [PATCH 1/6] Remove deprecated args from make commands --- Makefile | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Makefile b/Makefile index 28da1c94..27da576c 100644 --- a/Makefile +++ b/Makefile @@ -41,10 +41,10 @@ functional-sftp: pipenv run pytest tests/functional/sftp format: - black -l 99 src - black -l 99 tests - isort -rc src - isort -rc tests + pipenv run black -l 99 src + pipenv run black -l 99 tests + pipenv run isort src + pipenv run isort tests # Deployment From ca02f332788735754bbfae9cb92919cb818f829b Mon Sep 17 00:00:00 2001 From: matt-fleming Date: Fri, 17 Mar 2023 15:06:46 +0000 Subject: [PATCH 2/6] Update dev dependencies lockfile --- Pipfile | 3 - Pipfile.lock | 1186 +++++++++++++++++++++++++++----------------------- 2 files changed, 648 insertions(+), 541 deletions(-) diff --git a/Pipfile b/Pipfile index 94167979..80ce1bda 100644 --- a/Pipfile +++ b/Pipfile @@ -9,7 +9,6 @@ python_version = "3.9" [dev-packages] # Symlink to project root tentaclio = {editable = true,path = "."} - # Linting black = "*" isort = "*" @@ -18,13 +17,11 @@ mypy = "*" pydocstyle = "*" types-pyyaml = "*" types-requests = "*" - # Testing moto = "*" pytest = "*" pytest-cov = "*" pytest-mock = "*" - # Releasing twine = "*" secretstorage = "*" diff --git a/Pipfile.lock b/Pipfile.lock index 8c01c4d7..ae1bb8bb 100644 --- a/Pipfile.lock +++ b/Pipfile.lock @@ -19,152 +19,251 @@ "develop": { "attrs": { "hashes": [ - "sha256:2d27e3784d7a565d36ab851fe94887c5eccd6a463168875832a1be79c82828b4", - "sha256:626ba8234211db98e869df76230a137c4c40a12d72445c45d5f5b716f076e2fd" + "sha256:29e95c7f6778868dbd49170f98f8818f78f3dc5e0e37c0b1f474e3561b240836", + "sha256:c9227bfc2f01993c03f68db37d1d15c9690188323c067c641f1a35ca58185f99" ], - "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'", - "version": 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"sha256:56433961bc1f12533306c624f3be5e744389ac61d722175d543e1751285da612" ], "markers": "python_version >= '3.7'", - "version": "==2.1.2" + "version": "==2.2.3" }, "xmltodict": { "hashes": [ @@ -956,11 +1066,11 @@ }, "zipp": { "hashes": [ - "sha256:56bf8aadb83c24db6c4b577e13de374ccfb67da2078beba1d037c17980bf43ad", - "sha256:c4f6e5bbf48e74f7a38e7cc5b0480ff42b0ae5178957d564d18932525d5cf099" + "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b", + "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556" ], "markers": "python_version >= '3.7'", - "version": "==3.8.0" + "version": "==3.15.0" } } } From f8ba4963ab649e2ea41f3227a3c29e24729b5f9e Mon Sep 17 00:00:00 2001 From: matt-fleming Date: Fri, 17 Mar 2023 15:09:40 +0000 Subject: [PATCH 3/6] Fix linting and type hint to conform to new conventions --- src/tentaclio/clients/ftp_client.py | 6 +++--- src/tentaclio/clients/http_client.py | 25 ++++++++++++++--------- src/tentaclio/hooks/slack_hook.py | 12 +++++++++-- src/tentaclio/streams/api.py | 4 ++-- src/tentaclio/urls.py | 14 ++++++------- tests/unit/clients/test_decorators.py | 1 - tests/unit/clients/test_ftp_client.py | 2 -- tests/unit/clients/test_http_client.py | 2 -- tests/unit/credentials/test_api.py | 1 - tests/unit/streams/test_csv_db_stream.py | 1 - tests/unit/streams/test_stream_handler.py | 3 ++- tests/unit/test_urls.py | 1 - 12 files changed, 39 insertions(+), 33 deletions(-) diff --git a/src/tentaclio/clients/ftp_client.py b/src/tentaclio/clients/ftp_client.py index 48504e48..cd10c2a7 100644 --- a/src/tentaclio/clients/ftp_client.py +++ b/src/tentaclio/clients/ftp_client.py @@ -41,7 +41,7 @@ def _connect(self) -> ftplib.FTP: # Stream methods: @decorators.check_conn - def get(self, writer: protocols.ByteWriter, file_path: str = None) -> None: + def get(self, writer: protocols.ByteWriter, file_path: Optional[str] = None) -> None: """Write the contents of a remote file into the passed writer. Arguments: @@ -162,7 +162,7 @@ def _connect(self) -> pysftp.Connection: # Stream methods: @decorators.check_conn - def get(self, writer: protocols.ByteWriter, file_path: str = None) -> None: + def get(self, writer: protocols.ByteWriter, file_path: Optional[str] = None) -> None: """Write the contents of a remote file into the passed writer. Arguments: @@ -180,7 +180,7 @@ def get(self, writer: protocols.ByteWriter, file_path: str = None) -> None: self.conn.getfo(remote_path, writer) @decorators.check_conn - def put(self, reader: protocols.ByteReader, file_path: str = None) -> None: + def put(self, reader: protocols.ByteReader, file_path: Optional[str] = None) -> None: """Write the contents of the reader into the remote file. Arguments: diff --git a/src/tentaclio/clients/http_client.py b/src/tentaclio/clients/http_client.py index 94e322ee..5f42bced 100644 --- a/src/tentaclio/clients/http_client.py +++ b/src/tentaclio/clients/http_client.py @@ -38,7 +38,10 @@ class HTTPClient(base_client.BaseClient["HTTPClient"]): endpoint: str def __init__( - self, url: str, default_timeout: float = None, default_headers: dict = None + self, + url: str, + default_timeout: Optional[float] = None, + default_headers: Optional[dict] = None, ) -> None: """Create a new http/https client based on the passed url and extra params.""" # Default connection timeout at 10'' @@ -81,9 +84,9 @@ def _connect(self) -> requests.Session: def get( self, writer: protocols.ByteWriter, - endpoint: str = None, - params: dict = None, - options: dict = None, + endpoint: Optional[str] = None, + params: Optional[dict] = None, + options: Optional[dict] = None, ) -> None: """Read the contents from the url and write them into the provided writer. @@ -103,9 +106,9 @@ def get( def put( self, reader: protocols.ByteReader, - endpoint: str = None, - params: dict = None, - options: dict = None, + endpoint: Optional[str] = None, + params: Optional[dict] = None, + options: Optional[dict] = None, ) -> None: """Write the contents of the provided reader into the url using POST. @@ -132,8 +135,8 @@ def _build_request( self, method: str, url: str, - default_data: protocols.Reader = None, - default_params: dict = None, + default_data: Optional[protocols.Reader] = None, + default_params: Optional[dict] = None, ): data: Union[protocols.Reader, list] = default_data or [] params = default_params or {} @@ -149,7 +152,9 @@ def _build_request( return self.conn.prepare_request(request) - def _send_request(self, request: requests.PreparedRequest, default_options: dict = None): + def _send_request( + self, request: requests.PreparedRequest, default_options: Optional[dict] = None + ): options = default_options or {} response = self.conn.send( diff --git a/src/tentaclio/hooks/slack_hook.py b/src/tentaclio/hooks/slack_hook.py index ae42e858..e6c1fb1a 100644 --- a/src/tentaclio/hooks/slack_hook.py +++ b/src/tentaclio/hooks/slack_hook.py @@ -1,6 +1,7 @@ """Slack http hook.""" import io import json +from typing import Optional from tentaclio.clients import http_client @@ -16,7 +17,11 @@ def __init__(self, url: str) -> None: self.url = url def notify( - self, message: str, channel: str = None, username: str = None, icon_emoji: str = None + self, + message: str, + channel: Optional[str] = None, + username: Optional[str] = None, + icon_emoji: Optional[str] = None, ) -> None: """Send a notification to slack.""" body = self._build_request_body( @@ -31,7 +36,10 @@ def notify( @staticmethod def _build_request_body( - message: str, channel: str = None, username: str = None, icon_emoji: str = None + message: str, + channel: Optional[str] = None, + username: Optional[str] = None, + icon_emoji: Optional[str] = None, ) -> str: # Fetch message payload payload = dict(text=message) diff --git a/src/tentaclio/streams/api.py b/src/tentaclio/streams/api.py index af6235b4..2eaa8e30 100644 --- a/src/tentaclio/streams/api.py +++ b/src/tentaclio/streams/api.py @@ -1,5 +1,5 @@ """Main entry points to tentaclio-io.""" -from typing import ContextManager, Union +from typing import ContextManager, Optional, Union from tentaclio import protocols from tentaclio.credentials import authenticate @@ -17,7 +17,7 @@ ] -def open(url: str, mode: str = None, **kwargs) -> AnyContextStreamerReaderWriter: +def open(url: str, mode: Optional[str] = None, **kwargs) -> AnyContextStreamerReaderWriter: """Open a url and return a reader or writer depending on mode. Arguments: diff --git a/src/tentaclio/urls.py b/src/tentaclio/urls.py index 1b5768bc..5539f3f0 100644 --- a/src/tentaclio/urls.py +++ b/src/tentaclio/urls.py @@ -74,13 +74,13 @@ def _parse_url(self) -> None: def copy( self, - scheme: str = None, - username: str = None, - password: str = None, - hostname: str = None, - port: int = None, - path: str = None, - query: str = None, + scheme: Optional[str] = None, + username: Optional[str] = None, + password: Optional[str] = None, + hostname: Optional[str] = None, + port: Optional[int] = None, + path: Optional[str] = None, + query: Optional[str] = None, ) -> "URL": """Copy this url optionally overwriting the provided components.""" return URL.from_components( diff --git a/tests/unit/clients/test_decorators.py b/tests/unit/clients/test_decorators.py index 3f3e99e5..37b737f6 100644 --- a/tests/unit/clients/test_decorators.py +++ b/tests/unit/clients/test_decorators.py @@ -22,7 +22,6 @@ def test_inactive_client_connection(self): url = "file:///path" class TestClient(base_client.BaseClient): - allowed_schemes = ["file"] def connect(self): diff --git a/tests/unit/clients/test_ftp_client.py b/tests/unit/clients/test_ftp_client.py index a13fe00a..3729bf24 100644 --- a/tests/unit/clients/test_ftp_client.py +++ b/tests/unit/clients/test_ftp_client.py @@ -49,7 +49,6 @@ def test_parsing_ftp_url(self, url, username, password, hostname, port, path): @pytest.mark.parametrize("url,path", [("ftp://:@localhost", None)]) def test_get_invalid_path(self, url, path, mocked_ftp_conn): with ftp_client.FTPClient(url) as client: - with pytest.raises(exceptions.FTPError): client.get(io.StringIO(), file_path=path) @@ -149,7 +148,6 @@ def test_invalid_scheme(self, url): @pytest.mark.parametrize("url,path", [("sftp://:@localhost", None)]) def test_get_invalid_path(self, url, path, mocked_sftp_conn): with ftp_client.SFTPClient(url) as client: - with pytest.raises(exceptions.FTPError): client.get(io.StringIO(), file_path=path) diff --git a/tests/unit/clients/test_http_client.py b/tests/unit/clients/test_http_client.py index e3c667b4..de0f5bd2 100644 --- a/tests/unit/clients/test_http_client.py +++ b/tests/unit/clients/test_http_client.py @@ -53,7 +53,6 @@ def test_get_invalid_endpoint(self, url, path, mocker, mocked_http_conn): mocked_writer = mocker.Mock() with pytest.raises(exceptions.HTTPError): - with http_client.HTTPClient(url) as client: client.get(mocked_writer, endpoint=path) @@ -73,7 +72,6 @@ def test_get_invalid_endpoint(self, url, path, mocker, mocked_http_conn): ) def test_fetching_url_endpoint(self, base_url, endpoint, auth, full_url): with http_client.HTTPClient(base_url) as client: - assert client.conn.auth == auth assert client._fetch_url(endpoint) == full_url diff --git a/tests/unit/credentials/test_api.py b/tests/unit/credentials/test_api.py index c77e7310..f28c5d90 100644 --- a/tests/unit/credentials/test_api.py +++ b/tests/unit/credentials/test_api.py @@ -2,7 +2,6 @@ def test_authenticate(mocker): - injector = credentials.CredentialsInjector() injector.register_credentials(urls.URL("ftp://user:pass@google.com")) mock_cred = mocker.patch("tentaclio.credentials.api.load_credentials_injector") diff --git a/tests/unit/streams/test_csv_db_stream.py b/tests/unit/streams/test_csv_db_stream.py index fa2148a8..9ace6b78 100644 --- a/tests/unit/streams/test_csv_db_stream.py +++ b/tests/unit/streams/test_csv_db_stream.py @@ -22,7 +22,6 @@ def csv_data(): def test_dump_csv(csv_data, csv_dumper): - with csv_db_stream.DatabaseCsvWriter(csv_dumper, "my_table") as writer: writer.write(csv_data.getvalue()) diff --git a/tests/unit/streams/test_stream_handler.py b/tests/unit/streams/test_stream_handler.py index 581f142c..a6f031f4 100644 --- a/tests/unit/streams/test_stream_handler.py +++ b/tests/unit/streams/test_stream_handler.py @@ -1,4 +1,5 @@ import io +from typing import Optional import pytest @@ -9,7 +10,7 @@ class FakeClient(base_client.BaseClient["FakeClient"]): # clients only understand bytes - def __init__(self, url: URL, message: bytearray = None, *args, **kwargs): + def __init__(self, url: URL, message: Optional[bytearray] = None, *args, **kwargs): self._writer = io.BytesIO() self._message = message or bytes("hello", encoding="utf-8") self._closed = False diff --git a/tests/unit/test_urls.py b/tests/unit/test_urls.py index 3c3d9787..5f469ce3 100644 --- a/tests/unit/test_urls.py +++ b/tests/unit/test_urls.py @@ -4,7 +4,6 @@ class TestURL: - # Generic parsing rules: def test_missing_url(self): with pytest.raises(urls.URLError): From 75fda6936420a57f46ba95cd7ee9748ccd979591 Mon Sep 17 00:00:00 2001 From: matt-fleming Date: Fri, 17 Mar 2023 15:10:38 +0000 Subject: [PATCH 4/6] Use URL.create() to support sqlalchemy 2.0 --- src/tentaclio/clients/sqla_client.py | 20 +++++++++++--------- 1 file changed, 11 insertions(+), 9 deletions(-) diff --git a/src/tentaclio/clients/sqla_client.py b/src/tentaclio/clients/sqla_client.py index fa3fc83c..6cd00d63 100644 --- a/src/tentaclio/clients/sqla_client.py +++ b/src/tentaclio/clients/sqla_client.py @@ -7,8 +7,9 @@ from typing import Container, Generator, Optional, Union import pandas as pd +from sqlalchemy import text from sqlalchemy.engine import Connection, CursorResult, Engine, create_engine -from sqlalchemy.engine import url as sqla_url +from sqlalchemy.engine.url import URL as sqla_url from sqlalchemy.orm import session, sessionmaker from sqlalchemy.sql.schema import MetaData @@ -20,7 +21,7 @@ __all__ = ["SQLAlchemyClient", "bound_session", "atomic_session"] -SessionGenerator = Generator[None, session.Session, None] +SessionGenerator = Generator[session.Session, None, None] class _TrueContainer(Container[str]): @@ -57,7 +58,10 @@ class SQLAlchemyClient(base_client.BaseClient["SQLAlchemyClient"]): port: Optional[int] def __init__( - self, url: Union[str, urls.URL], execution_options: dict = None, connect_args: dict = None + self, + url: Union[str, urls.URL], + execution_options: Optional[dict] = None, + connect_args: Optional[dict] = None, ) -> None: """Create sqlalchemy client based on the passed url. @@ -84,15 +88,13 @@ def _extract_url_params(self) -> None: # Connection methods: def _connect(self) -> Connection: - - parsed_url = sqla_url.URL( + parsed_url = sqla_url.create( drivername=self.drivername, username=self.username, password=self.password, host=self.host, port=self.port, database=self.database, - query=self.url_query, ) if self.engine is None: self.engine = create_engine( @@ -124,14 +126,14 @@ def query(self, sql_query: str, **kwargs) -> CursorResult: This will not commit any changes to the database. """ - return self.conn.execute(sql_query, **kwargs) + return self.conn.execute(text(sql_query), **kwargs) @decorators.check_conn def execute(self, sql_query: str, **kwargs) -> None: """Execute a raw SQL query command.""" trans = self.conn.begin() try: - self.conn.execute(sql_query, **kwargs) + self.conn.execute(text(sql_query), **kwargs) except Exception: trans.rollback() raise @@ -141,7 +143,7 @@ def execute(self, sql_query: str, **kwargs) -> None: # Dataframe methods: @decorators.check_conn - def get_df(self, sql_query: str, params: dict = None, **kwargs) -> pd.DataFrame: + def get_df(self, sql_query: str, params: Optional[dict] = None, **kwargs) -> pd.DataFrame: """Run a raw SQL query and return a data frame.""" return pd.read_sql(sql_query, self.conn, params=params, **kwargs) From 40acc55a9a7db07992d636f1f4020d52c04b353a Mon Sep 17 00:00:00 2001 From: matt-fleming Date: Fri, 17 Mar 2023 15:13:42 +0000 Subject: [PATCH 5/6] Bump version and update changelog --- CHANGELOG.txt | 5 +++++ setup.py | 2 +- 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.txt b/CHANGELOG.txt index 0f3d3e1a..f00a5319 100644 --- a/CHANGELOG.txt +++ b/CHANGELOG.txt @@ -4,6 +4,11 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [1.2.0] - 2023-04-06 +### Added + - Add support for SQLAlchemy 2.0 by correctly handling `sqlalchemy.engine.url.URL`s, which are now immutable. + Older versions of tentaclio should pin `sqlalchemy < 2.0` to avoid this issue. + ## [1.1.0] - 2023-04-05 ### Changed - Credential files error reporting to help users identify the credentials issues diff --git a/setup.py b/setup.py index 77e6cfb7..2c109a4a 100644 --- a/setup.py +++ b/setup.py @@ -8,7 +8,7 @@ from setuptools.command.install import install -VERSION = "1.1.0" +VERSION = "1.2.0" REPO_ROOT = pathlib.Path(__file__).parent From f34d6a03f94208148d977f1639a7f31f77bcff71 Mon Sep 17 00:00:00 2001 From: matt-fleming Date: Mon, 20 Mar 2023 16:27:59 +0000 Subject: [PATCH 6/6] Changed sqla client to add query params as string --- src/tentaclio/clients/sqla_client.py | 2 ++ src/tentaclio/urls.py | 7 +++++++ 2 files changed, 9 insertions(+) diff --git a/src/tentaclio/clients/sqla_client.py b/src/tentaclio/clients/sqla_client.py index 6cd00d63..c52d9686 100644 --- a/src/tentaclio/clients/sqla_client.py +++ b/src/tentaclio/clients/sqla_client.py @@ -96,6 +96,8 @@ def _connect(self) -> Connection: port=self.port, database=self.database, ) + if self.url.query_string: + parsed_url.update_query_string(self.url.query_string) if self.engine is None: self.engine = create_engine( parsed_url, diff --git a/src/tentaclio/urls.py b/src/tentaclio/urls.py index 5539f3f0..86735689 100644 --- a/src/tentaclio/urls.py +++ b/src/tentaclio/urls.py @@ -38,6 +38,7 @@ class URL: _port: Optional[int] = None _path: str _query: Optional[Dict[str, str]] = None + _query_string: Optional[str] = None def __init__(self, url: str) -> None: """Create a url by parsing the parametre.""" @@ -57,6 +58,7 @@ def _parse_url(self) -> None: self._hostname = parsed_url.hostname self._port = parsed_url.port self._path = parsed_url.path + self._query_string = parsed_url.query # Replace %xx escapes - ONLY for username & password if parsed_url.username and self._username: @@ -168,6 +170,11 @@ def query(self) -> Optional[Dict[str, str]]: """Access the query.""" return self._query + @property + def query_string(self) -> Optional[str]: + """Access the query string.""" + return self._query_string + @property def url(self) -> str: """Return the original url."""