List view

Add kraken2 phylogenetic assignment subworkflow

Status: Open (in progress).

nf-core/seqinspectornumber 47

#47 In nf-core/seqinspector;

· ctuni opened on Oct 28, 2024

add bbmap clumpify

Status: Draft (not ready).

nf-core/seqinspectornumber 52

#52 In nf-core/seqinspector;

· erkutilaslan opened on Oct 29, 2024

Adds FASTQE for summarising FASTQ scores as emojis

Status: Open (in progress).

nf-core/seqinspectornumber 66

#66 In nf-core/seqinspector;

· adamrtalbot opened on Nov 1, 2024

Adds fq/lint for early validation of FASTQs

Status: Open (in progress).

nf-core/seqinspectornumber 67

#67 In nf-core/seqinspector;

· adamrtalbot opened on Nov 2, 2024

Add long reads

Status: Open (in progress).

nf-core/seqinspectornumber 109

#109 In nf-core/seqinspector;

· TMAdams opened on Mar 26, 2025

Add sequali

Status: Open (in progress).

nf-core/seqinspectornumber 134

#134 In nf-core/seqinspector;

· pontushojer opened on Oct 23, 2025

New subworkflow and module to assess polyG error in NovaSeq X Plus data

enhancementNew feature or requestNew feature or request

Status: Open.

Enhancement

#29 In nf-core/seqinspector;

· MatthiasZepper opened on Oct 21, 2024

Add FQlint module

enhancementNew feature or requestNew feature or request

Status: Open.

#31 In nf-core/seqinspector;

· MatthiasZepper opened on Oct 21, 2024

add support for long reads (PacBio and/or ONT)

help wantedExtra attention is neededExtra attention is needed

Status: Open.

Enhancement

#33 In nf-core/seqinspector;

· FranBonath opened on Oct 25, 2024

add seqqc to seqinspector

Status: Open.

#37 In nf-core/seqinspector;

· FranBonath opened on Oct 28, 2024

add BBMap to seqinspector

Status: Open.

#38 In nf-core/seqinspector;

· FranBonath opened on Oct 28, 2024

add clumpify to seqinspector

Status: Open.

#41 In nf-core/seqinspector;

· FranBonath opened on Oct 28, 2024

add bbtools to seqinspector

Status: Open.

#42 In nf-core/seqinspector;

· FranBonath opened on Oct 28, 2024

add kraken2 to seqinspector

help wantedExtra attention is neededExtra attention is needed

review requested

Status: Open.

#44 In nf-core/seqinspector;

· FranBonath opened on Oct 28, 2024

Magmap release

enhancementNew feature or requestNew feature or request

Status: Open.

#45 In nf-core/seqinspector;

· danilodileo opened on Oct 28, 2024

Add relative sample size input in subsampling

enhancementNew feature or requestNew feature or request

Status: Open.

#60 In nf-core/seqinspector;

· nggvs opened on Oct 29, 2024

Add SeqWho as alignment-free FastQScreen alternative

enhancementNew feature or requestNew feature or request

Status: Open.

#62 In nf-core/seqinspector;

· MatthiasZepper opened on Oct 29, 2024

Allow fastqscreen inputs to just be a fasta

enhancementNew feature or requestNew feature or request

Status: Open.

#76 In nf-core/seqinspector;

· edmundmiller opened on Feb 24, 2025

Use MultiQC feature to merge paired-end sample rows in report tables

enhancementNew feature or requestNew feature or request

Status: Open.

#105 In nf-core/seqinspector;

· kedhammar opened on Mar 25, 2025

Elucidate which tools have run on sampled inputs in MultiQC report

enhancementNew feature or requestNew feature or request

Status: Open.

#122 In nf-core/seqinspector;

· pontushojer opened on Jul 15, 2025

Add CheckQC module

enhancementNew feature or requestNew feature or request

Status: Open.

#123 In nf-core/seqinspector;

· brovolia opened on Jul 22, 2025

Update to MultiQC 1.31 for improved seqfu stats reports

Status: Open.

#126 In nf-core/seqinspector;

· pontushojer opened on Sep 8, 2025

Update seqfu to >1.22.1

enhancementNew feature or requestNew feature or request

Status: Open.

#129 In nf-core/seqinspector;

· pontushojer opened on Oct 7, 2025

Seqkit

Status: Draft (not ready).

nf-core/seqinspectornumber 59

#59 In nf-core/seqinspector;

· sarahjeeeze opened on Oct 29, 2024