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Error "reached CPU time limit" #158

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ValentineObrezanenko opened this issue Oct 15, 2024 · 0 comments
Open

Error "reached CPU time limit" #158

ValentineObrezanenko opened this issue Oct 15, 2024 · 0 comments
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bug Something isn't working

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@ValentineObrezanenko
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Description of the bug

In DESeqDataSet(rse, design, ignoreRank = TRUE) :
    some variables in design formula are characters, converting to factors
  Error in fn(par, ...) : reached CPU time limit
  Calls: lapply ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
  Execution halted

Good afternoon! I put a small sample (34 samples) into processing - everything went well, without errors. I set a sample for 130 samples, constantly crashes at this place with such an error. Tell me, what could be the problem? I have increased the memory and time limits. Thank you.

Command used and terminal output

In DESeqDataSet(rse, design, ignoreRank = TRUE) :
some variables in design formula are characters, converting to factors
Error in fn(par, ...) : reached CPU time limit
Calls: lapply ... tryCatch -> tryCatchList -> tryCatchOne ->
Execution halted

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@ValentineObrezanenko ValentineObrezanenko added the bug Something isn't working label Oct 15, 2024
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